Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022330.1 Corchorus olitorius cultivar O-4 contig22363, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25980

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11436--11515
29
2.7
30
88
3
108
28
18
12
40
1.87
11644--11732
31
2.9
30
85
3
124
44
12
13
29
1.80
11629--11728
30
3.3
31
83
4
123
45
12
16
27
1.82
11777--11804
7
4.0
7
100
0
56
0
14
0
85
0.59
11895--12125
126
1.8
126
84
5
315
51
1
11
35
1.46
12590--12665
31
2.5
31
100
0
152
25
14
14
46
1.82
12792--12865
29
2.5
30
84
4
96
43
14
17
24
1.87
12980--13109
31
4.2
31
85
0
179
49
3
16
30
1.64
12952--13484
136
3.6
142
85
10
623
46
4
17
31
1.69
13123--13245
31
4.2
31
78
14
134
49
3
16
30
1.61
13259--13360
32
3.2
32
98
1
197
50
2
15
31
1.59
13322--13460
50
2.8
50
94
1
233
44
5
15
33
1.71
13423--13490
31
2.2
31
86
5
93
47
4
16
32
1.66
13197--13571
81
4.6
81
77
11
392
46
5
17
31
1.70
13290--13541
131
1.9
133
91
3
420
45
5
16
32
1.70
13504--13595
31
3.0
31
81
12
125
51
2
18
28
1.58
13423--13743
112
2.9
113
87
5
465
47
5
16
30
1.69
13618--13716
32
3.2
31
80
11
112
49
4
14
32
1.61
13677--13795
48
2.3
51
80
9
127
42
8
17
31
1.79
15125--15164
20
2.0
21
90
5
64
57
0
17
25
1.40
17953--17986
17
2.0
17
94
0
59
41
5
8
44
1.60

Tables:   1

The End!