genome.fa.s22356.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022356.1 Corchorus olitorius cultivar O-4 contig22389, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135446

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197--232	19	1.9	18	88	5	54	41	8	22	27	1.82
1826--1956	28	4.6	28	91	1	181	39	26	16	17	1.90
3784--3824	17	2.4	17	100	0	82	34	29	7	29	1.84
4310--4346	12	3.1	12	96	0	65	8	29	16	45	1.76
10735--10974	50	4.8	50	86	6	299	45	6	10	38	1.64
10735--10974	99	2.4	100	84	6	299	45	6	10	38	1.64
10939--11054	50	2.3	50	85	4	162	45	5	12	36	1.65
10991--11378	101	3.8	100	81	4	363	44	5	13	35	1.68
10919--11782	152	5.8	150	74	9	531	43	6	13	35	1.70
11051--11126	23	3.2	21	67	28	53	42	6	13	38	1.70
10892--11689	51	15.8	50	81	5	470	44	6	13	35	1.70
12296--12408	41	2.8	41	91	0	172	12	24	23	39	1.89
12370--12914	97	5.6	98	85	2	700	17	22	17	42	1.89
12370--12914	49	11.1	49	85	2	691	17	22	17	42	1.89
23861--23896	17	2.1	17	94	0	63	88	11	0	0	0.50
27185--27703	50	10.3	50	80	7	410	40	5	17	36	1.73
27101--27703	100	6.0	100	76	8	440	40	5	17	36	1.72
27095--27704	200	3.0	201	78	9	550	40	5	17	36	1.71
27534--27576	20	2.2	20	87	8	61	46	0	18	34	1.50
28314--29067	43	16.9	45	79	10	599	21	28	16	33	1.95
28314--29067	87	8.5	86	80	8	660	21	28	16	33	1.95
28413--28972	46	12.7	42	79	9	250	21	29	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29125--29409	48	5.9	48	84	7	364	12	23	21	42	1.87
29084--29409	97	3.5	97	84	7	408	12	23	21	42	1.87
29125--29399	145	1.9	145	88	3	419	12	23	22	42	1.87
29680--29828	43	3.5	43	85	2	192	21	29	14	34	1.92
29646--29854	86	2.4	85	79	6	231	20	29	15	33	1.94
29646--29854	43	4.8	42	77	13	167	20	29	15	33	1.94
29908--30192	48	5.9	48	84	6	362	12	23	21	42	1.86
29908--30192	96	3.0	96	86	6	414	12	23	21	42	1.86
29908--30182	145	1.9	145	87	3	410	12	23	22	42	1.87
41920--41956	2	18.5	2	100	0	74	48	0	0	51	1.00
42007--42103	48	2.0	48	82	4	115	22	13	17	46	1.83
44027--44106	29	2.8	29	78	3	81	45	35	7	12	1.70
51578--51615	18	2.0	21	85	15	55	5	26	10	57	1.53
53038--53125	29	3.0	29	77	6	88	44	32	10	12	1.76
64592--64630	16	2.4	16	91	8	62	12	7	12	66	1.43
72108--72170	31	2.1	30	93	3	108	14	7	46	31	1.73
73271--73331	26	2.5	25	85	12	83	65	9	16	8	1.45
73271--73331	24	2.5	26	87	10	85	65	9	16	8	1.45
77615--77724	51	2.2	51	80	11	120	20	22	13	42	1.87
78261--78379	49	2.4	50	92	4	206	45	3	10	41	1.54
78361--79056	50	13.8	50	76	10	394	44	6	14	34	1.71
78361--78682	151	2.1	151	78	5	339	45	7	13	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78432--79057	50	12.4	50	77	9	436	43	6	14	34	1.71
78432--79058	101	6.2	100	76	10	465	43	6	14	35	1.71
78634--78922	102	2.8	100	89	3	418	44	5	14	35	1.68
78633--78924	153	1.9	153	89	2	453	44	5	14	35	1.69
78818--78859	20	2.2	19	80	16	50	45	7	14	33	1.72
79580--79606	8	3.4	8	100	0	54	66	11	0	22	1.22
79635--79759	48	2.6	49	87	2	180	11	21	24	43	1.85
79684--79849	89	1.9	89	82	5	210	16	22	22	37	1.93
79773--79973	48	4.1	48	85	6	237	17	19	20	42	1.89
79773--79993	97	2.3	97	83	6	261	17	19	20	41	1.90
79948--80056	41	2.7	39	81	12	139	11	29	16	42	1.84
80030--80123	49	1.9	49	93	0	161	10	18	22	48	1.78
81961--81993	17	1.9	17	93	0	57	12	36	18	33	1.88
90238--90288	19	2.7	19	80	14	70	45	0	3	50	1.20
91634--91735	51	2.0	50	81	9	118	22	22	13	41	1.89
102964--102989	13	2.0	13	100	0	52	15	0	30	53	1.42
128527--128622	29	3.4	29	87	5	135	43	22	15	17	1.87
129077--129126	22	2.3	22	96	0	91	10	52	34	4	1.54
131280--131325	24	2.0	24	83	12	60	6	19	21	52	1.69
132722--132761	18	2.2	19	90	4	64	40	15	17	27	1.89
132922--132955	17	2.0	17	88	11	52	17	0	2	79	0.86
133477--133600	65	1.9	65	96	0	230	21	25	32	20	1.98

Tables:   1

The End!