genome.fa.s22399.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022399.1 Corchorus olitorius cultivar O-4 contig22432, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24077

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--985	27	37.0	27	89	5	1417	27	12	27	32	1.93
1--1389	79	17.8	79	83	9	1585	27	12	26	32	1.93
315--341	13	2.1	13	100	0	54	14	7	40	37	1.74
268--391	62	2.0	64	91	4	207	23	12	31	33	1.91
332--1389	106	10.3	104	87	7	1384	27	13	26	32	1.93
983--1009	13	2.1	13	100	0	54	14	7	40	37	1.74
962--1036	38	1.9	40	94	5	136	24	10	29	36	1.89
1000--1380	27	14.8	27	82	8	379	28	12	25	33	1.92
908--1088	92	2.0	92	98	0	353	26	12	27	33	1.93
343--1389	159	6.6	160	84	8	1198	27	12	26	32	1.93
802--1364	198	3.0	197	84	7	686	27	13	26	32	1.93
1280--1377	22	4.1	22	72	19	81	31	10	22	35	1.88
1689--4073	331	7.2	331	86	4	3212	34	13	15	36	1.87
1689--4073	663	3.6	662	86	4	3277	34	13	15	36	1.87
4274--4930	329	2.0	330	94	0	1156	30	18	18	32	1.95
5651--5693	15	2.8	15	92	3	68	62	13	11	11	1.54
13125--13186	6	10.8	6	87	6	60	0	17	0	82	0.67
13148--13178	1	31.0	1	93	0	53	0	3	0	96	0.21
13142--13181	9	4.6	9	87	6	55	0	10	0	90	0.47
15559--15743	101	1.9	97	84	5	244	36	10	15	37	1.82
16967--17158	97	2.0	99	86	4	273	33	11	17	37	1.86
17064--21025	331	12.0	331	86	4	5083	34	14	15	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17064--21025	994	4.0	990	86	4	5179	34	14	15	35	1.89
20889--21158	136	2.0	135	84	5	357	38	13	12	35	1.83
20559--21488	466	2.0	466	89	2	1429	35	13	14	35	1.87
21025--24068	332	9.2	331	89	2	4463	33	14	15	36	1.88
21025--24068	990	3.1	989	90	2	4658	33	14	15	36	1.88

Tables:   1

The End!