Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022413.1 Corchorus olitorius cultivar O-4 contig22446, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87120

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
356--402
14
3.2
14
80
16
51
23
10
2
63
1.37
356--388
8
4.4
8
85
14
52
24
12
0
63
1.28
356--402
22
2.1
22
88
7
69
23
10
2
63
1.37
295--479
93
2.0
93
92
0
307
32
12
2
52
1.51
7894--7933
21
1.9
21
100
0
80
40
15
25
20
1.90
11732--11773
6
7.0
6
100
0
84
33
50
0
16
1.46
25862--25893
16
2.0
16
93
0
55
34
6
25
34
1.81
26130--26201
31
2.5
29
89
10
112
30
27
5
36
1.80
34448--34477
15
2.0
15
100
0
60
20
6
20
53
1.67
36124--36167
18
2.4
18
96
0
79
40
0
29
29
1.57
46733--46833
48
2.1
49
94
3
177
52
8
20
17
1.71
55360--55436
36
2.1
36
85
7
100
9
37
12
40
1.76
55357--55436
39
2.1
39
85
0
106
10
37
12
40
1.77
55387--55442
18
3.1
18
77
10
60
7
35
17
39
1.78
55385--55445
21
2.9
21
78
9
70
6
36
18
39
1.76
56702--56760
29
2.0
29
100
0
118
13
15
10
61
1.57
56707--56771
29
2.2
29
88
2
94
12
10
15
61
1.56
62787--62830
21
2.1
21
86
0
61
13
40
9
36
1.76
63045--63118
10
7.7
10
72
14
66
44
0
1
54
1.08
63051--63118
7
10.6
7
77
17
58
45
0
1
52
1.09
63048--63118
19
3.7
19
78
14
67
45
0
1
53
1.09
78843--80103
26
48.2
26
89
5
1764
29
15
22
33
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79158--79224
33
2.0
34
94
2
118
29
13
19
37
1.90
79837--79873
19
1.9
19
100
0
74
21
16
27
35
1.94
79901--79925
10
2.5
10
100
0
50
32
12
16
40
1.84
80609--82611
648
3.1
648
88
4
2897
34
16
15
33
1.90
80563--82611
320
6.3
319
73
10
1601
34
16
15
33
1.90
82422--82812
204
1.9
203
82
1
487
35
15
18
30
1.92
82611--87109
647
7.0
650
91
2
7036
34
16
15
33
1.90

Tables:   1

The End!