Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022418.1 Corchorus olitorius cultivar O-4 contig22451, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87206

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
382--418
17
2.2
17
100
0
74
48
16
5
29
1.68
1312--1418
2
59.0
2
68
22
58
56
1
0
42
1.10
1601--2502
332
2.7
331
92
1
1468
33
15
17
33
1.91
2114--2922
419
1.9
420
86
1
1158
35
14
16
32
1.90
2498--3395
332
2.7
331
84
5
1105
34
14
16
34
1.90
1789--3251
751
1.9
750
88
2
2199
34
14
17
33
1.90
3139--3637
261
1.9
261
88
3
754
35
14
15
34
1.88
3400--7228
980
3.9
981
85
5
4744
34
15
16
33
1.90
3400--7228
331
11.6
332
84
4
4771
34
15
16
33
1.90
7754--10126
333
7.2
334
81
6
2587
34
15
16
34
1.90
10166--10216
20
2.5
20
96
0
93
13
33
19
33
1.91
14204--14229
1
26.0
1
100
0
52
100
0
0
0
0.00
16226--16279
18
3.0
18
86
0
63
31
14
29
24
1.95
17797--17997
100
2.0
100
100
0
402
49
14
8
26
1.73
18088--18305
100
2.2
100
81
6
228
33
19
13
33
1.91
21059--21140
30
3.3
23
72
23
60
30
18
10
40
1.85
35381--35565
92
2.0
93
90
4
295
27
14
17
41
1.88
45686--45817
66
2.0
66
98
0
255
28
9
25
37
1.86
65356--65385
16
1.9
15
93
6
51
10
0
16
73
1.09
67508--67546
21
1.9
21
89
5
62
28
12
2
56
1.50
79231--79303
32
2.3
32
85
4
94
17
24
9
47
1.77
84382--85416
439
2.4
435
84
3
1263
42
12
13
31
1.81

Tables:   1

The End!