Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022447.1 Corchorus olitorius cultivar O-4 contig22480, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47375

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
715--810
31
3.1
31
90
3
149
33
14
10
41
1.80
934--1013
29
2.7
30
82
3
90
40
10
18
31
1.84
1498--1555
21
2.9
19
79
5
62
32
22
10
34
1.88
1498--1555
19
2.9
20
75
14
57
32
22
10
34
1.88
5424--5462
20
2.0
20
85
10
53
12
25
5
56
1.57
8376--8447
29
2.4
30
77
9
76
44
8
23
23
1.80
19942--19992
17
3.1
16
86
8
66
21
21
21
35
1.96
22112--22168
25
2.4
24
88
5
80
59
3
5
31
1.36
23248--23320
28
2.6
28
91
0
110
24
1
38
35
1.64
27991--28031
23
1.9
20
85
14
55
9
19
9
60
1.55
36737--36785
24
2.1
24
92
3
82
57
12
16
14
1.66
36779--37050
151
1.8
143
89
6
418
38
14
18
29
1.90
37088--37408
160
2.0
160
100
0
642
29
29
18
23
1.97
39720--47375
665
11.2
669
74
12
5330
33
13
17
34
1.90
39720--42242
335
7.6
333
87
3
3599
33
13
17
35
1.89
42404--47375
334
14.9
335
86
4
6695
32
14
17
34
1.90
44475--47375
673
4.3
669
88
3
4167
33
14
17
34
1.90

Tables:   1

The End!