Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022466.1 Corchorus olitorius cultivar O-4 contig22499, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142761

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1522--1896
98
3.8
97
69
17
315
50
3
13
33
1.57
1821--2239
218
1.9
218
86
2
601
49
4
13
32
1.63
2227--2251
12
2.1
12
100
0
50
32
0
8
60
1.26
23701--23736
18
2.0
18
89
10
56
38
8
27
25
1.84
31937--32005
31
2.3
31
87
5
97
30
10
13
46
1.75
35444--35815
125
3.0
125
95
1
660
22
21
20
35
1.96
36100--36131
10
3.4
10
83
16
50
40
15
0
43
1.47
43096--43138
22
2.0
22
90
0
68
16
16
2
65
1.38
48543--48569
13
2.1
13
100
0
54
37
22
7
33
1.82
52695--52795
48
2.1
48
92
1
168
33
14
19
31
1.93
56298--66637
330
31.6
331
83
4
12370
35
16
15
33
1.90
66647--66680
16
2.1
16
100
0
68
64
11
5
17
1.45
77016--77043
2
14.0
2
100
0
56
50
0
0
50
1.00
77212--77267
21
2.8
20
83
5
69
37
10
21
30
1.87
78583--78644
30
2.1
30
87
3
90
43
4
17
33
1.71
80963--80987
13
1.9
13
100
0
50
44
0
0
56
0.99
84302--84351
16
3.2
16
71
18
52
54
0
14
32
1.40
89150--89175
9
2.9
9
100
0
52
34
30
0
34
1.58
90704--90766
31
2.0
31
87
6
92
39
7
6
46
1.59
97209--97261
23
2.4
22
87
3
70
50
1
1
45
1.23
97209--97261
10
4.7
11
78
15
56
50
1
1
45
1.23
101409--101490
31
2.6
31
84
1
101
17
23
26
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104393--104434
21
2.0
21
86
4
59
71
11
7
9
1.31
115562--115605
6
7.3
6
78
0
52
0
65
2
31
1.05
115556--115611
12
4.7
12
86
0
76
0
66
1
32
1.03
115554--115605
18
2.8
18
82
2
68
0
65
1
32
1.04
118823--118943
61
2.0
61
93
0
206
27
22
16
33
1.95
124566--124626
18
3.3
18
69
13
61
36
1
16
45
1.57
124583--124645
19
3.4
19
70
12
67
36
3
19
41
1.67
124566--124645
37
2.2
37
100
0
160
36
2
17
43
1.63
135786--135813
2
14.0
2
100
0
56
50
0
0
50
1.00
139349--139451
32
3.2
32
82
5
111
20
24
24
31
1.98

Tables:   1

The End!