Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022470.1 Corchorus olitorius cultivar O-4 contig22503, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63771

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
908--941
6
5.8
6
93
6
61
32
0
0
67
0.91
3848--3880
7
4.9
7
96
3
59
30
30
0
39
1.57
28145--28186
3
14.0
3
100
0
84
33
0
0
66
0.92
31782--31838
30
1.9
30
92
0
96
31
24
8
35
1.86
37367--37480
56
2.0
56
96
0
210
40
1
23
34
1.65
37666--37709
16
2.8
16
83
10
56
45
0
9
45
1.35
42191--42274
30
2.7
30
88
3
123
29
4
13
52
1.60
42191--42271
32
2.6
31
90
5
119
30
4
13
50
1.63
42532--42623
44
2.1
44
93
2
159
45
23
0
30
1.53
43171--43209
20
1.9
21
89
5
62
38
20
2
38
1.66
45092--45207
35
3.3
35
70
20
116
36
22
6
34
1.81
45086--45225
69
2.0
69
100
0
280
35
23
5
35
1.79
53621--53683
30
2.1
30
96
0
117
22
22
6
49
1.72
56114--56143
15
1.9
16
93
6
53
43
0
3
53
1.17
56505--63771
331
21.8
330
81
6
7215
32
14
15
36
1.89

Tables:   1

The End!