genome.fa.s22475.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022475.1 Corchorus olitorius cultivar O-4 contig22508, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84999

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1199--1298	22	4.5	22	72	8	87	38	11	10	41	1.74
1248--1341	22	4.2	22	73	17	77	38	11	7	42	1.70
2915--3961	439	2.4	431	81	7	1223	30	13	13	41	1.84
4273--4323	24	2.1	25	85	3	68	70	3	7	17	1.27
5482--5587	52	2.0	52	94	0	185	49	13	13	24	1.77
15661--15726	35	1.9	35	87	6	100	24	4	12	59	1.52
16279--16504	112	2.0	112	93	0	389	35	8	18	37	1.82
17596--17652	30	1.9	30	89	10	91	29	3	12	54	1.54
27490--27533	23	1.9	23	95	0	79	59	0	20	20	1.39
28897--28939	19	2.3	18	84	15	52	44	16	11	27	1.82
30680--30720	17	2.6	16	85	14	50	39	14	12	34	1.84
31797--31832	19	1.9	20	88	11	58	69	0	0	30	0.89
40592--40674	15	5.1	15	82	13	94	31	59	2	7	1.38
40598--40674	18	4.4	18	83	9	115	31	61	1	6	1.30
40592--40674	33	2.6	30	80	16	94	31	59	2	7	1.38
42031--42059	4	7.2	4	100	0	58	24	0	24	51	1.48
43700--43728	3	9.7	3	100	0	58	34	65	0	0	0.93
43962--44007	24	1.9	24	100	0	92	34	28	17	19	1.94
43986--44083	51	1.9	51	93	0	169	26	29	20	23	1.99
43949--44051	24	4.2	24	62	16	57	30	27	20	22	1.98
62905--62933	1	29.0	1	100	0	58	0	0	0	100	0.00
66042--66669	333	1.9	335	85	2	870	37	16	14	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64738--66686	983	2.0	975	81	6	2322	36	16	13	33	1.88
68585--68638	27	2.0	27	85	3	74	20	9	5	64	1.42
69145--70997	332	5.6	329	79	8	1867	34	14	15	35	1.88
69145--71907	638	4.2	633	81	7	2694	33	14	15	35	1.89
77331--77423	42	2.2	42	90	1	141	36	17	1	45	1.56
78046--78084	21	1.9	20	84	5	51	46	0	5	48	1.24
81994--82023	15	2.0	15	93	0	51	43	26	10	20	1.83
82168--82217	16	3.2	16	80	5	59	50	0	4	46	1.20
83779--83819	15	2.7	15	88	3	55	39	0	2	58	1.11
84177--84985	331	2.4	332	83	4	993	34	14	15	35	1.88

Tables:   1

The End!