genome.fa.s22484.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022484.1 Corchorus olitorius cultivar O-4 contig22517, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84546

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87--143	25	2.4	25	88	5	82	31	5	3	59	1.36
1577--1646	36	1.9	36	97	0	131	61	7	8	22	1.49
2109--2451	178	1.9	178	94	0	605	40	7	13	38	1.73
4076--4264	104	1.8	103	95	1	342	25	16	10	47	1.79
21474--21507	4	8.5	4	93	0	59	47	2	0	50	1.16
28808--28967	79	2.0	79	100	0	320	28	20	20	30	1.97
46844--46972	65	2.0	65	93	0	222	41	17	14	27	1.88
46940--47127	92	2.0	93	95	1	342	46	6	7	38	1.59
47208--47362	80	1.9	79	94	1	274	43	7	7	41	1.62
47310--47384	37	2.1	37	89	2	116	40	6	4	49	1.48
53532--57846	330	13.1	326	72	12	2477	37	15	14	32	1.88
56102--57846	972	1.8	966	82	4	2289	36	15	14	33	1.88
57600--58095	252	2.0	251	85	2	665	37	17	12	32	1.88
57270--58431	581	2.0	585	86	3	1626	36	16	13	33	1.88
57849--59195	333	4.2	326	74	10	1072	36	16	15	32	1.90
59054--59361	156	2.0	156	98	0	598	33	15	20	29	1.94
61362--63277	662	2.9	646	86	6	2484	36	15	14	33	1.88
63806--63830	8	3.1	8	100	0	50	48	0	24	28	1.52
66320--66378	31	1.9	31	92	0	100	16	6	28	47	1.72
66465--66552	45	2.0	45	100	0	176	40	20	9	29	1.83
69832--70073	126	1.9	126	92	3	405	41	12	11	34	1.79
70100--70766	135	4.9	135	79	11	531	39	11	13	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70360--70632	150	1.8	149	90	0	438	37	12	14	35	1.85
70226--70912	283	2.4	281	87	3	932	38	12	13	35	1.82
69819--70766	410	2.3	407	83	7	1150	39	12	13	34	1.83
71283--71340	30	1.9	30	89	0	89	56	1	15	25	1.49
72145--72173	13	2.2	13	100	0	58	17	6	24	51	1.69
72345--73020	154	4.4	153	85	4	880	40	12	11	35	1.80
74790--74972	89	2.0	90	98	1	359	45	6	5	42	1.51
74892--75220	157	2.1	156	82	6	405	42	11	10	35	1.75
75161--75278	58	2.0	58	88	0	173	39	12	14	33	1.84
81097--81127	10	3.1	10	95	0	53	38	19	12	29	1.89
81147--81185	19	2.1	19	100	0	78	46	10	10	33	1.72
81795--81862	22	3.3	22	68	19	74	51	10	1	36	1.45
81797--81863	18	3.6	18	69	25	57	52	10	1	35	1.45
81783--81864	39	2.0	41	93	4	141	51	8	2	37	1.46
81975--82385	201	2.0	202	91	2	673	36	11	8	43	1.72
83880--83919	12	3.4	12	82	3	55	7	37	42	12	1.71

Tables:   1

The End!