Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022486.1 Corchorus olitorius cultivar O-4 contig22519, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22433

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
264--306
18
2.4
18
100
0
86
34
23
11
30
1.90
2759--7571
332
14.6
328
77
9
4114
37
15
14
33
1.88
7921--7950
15
1.9
16
93
6
53
53
3
0
43
1.17
8956--9305
156
2.2
156
88
2
506
38
13
10
37
1.79
10459--10636
96
1.9
95
88
5
270
35
12
14
36
1.85
11041--11107
21
3.2
21
66
16
57
52
11
1
34
1.48
11032--11112
42
2.0
42
90
4
130
54
9
1
34
1.42
11103--11149
25
1.9
24
95
4
85
29
6
8
55
1.55
11249--11631
202
1.9
202
95
1
687
35
11
8
44
1.71
12591--12657
21
3.2
21
66
16
57
52
11
1
34
1.48
19449--19487
14
2.9
13
80
3
51
53
2
2
41
1.28
19473--19727
131
2.0
123
88
8
379
49
1
10
37
1.49
19968--20043
41
1.9
38
92
7
125
34
22
0
43
1.54
20151--20313
90
1.8
87
88
6
247
31
11
3
53
1.52
21461--21605
78
1.9
78
88
2
220
37
11
14
35
1.83
21571--21859
153
1.9
158
85
7
414
41
14
8
35
1.75

Tables:   1

The End!