genome.fa.s22520.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022520.1 Corchorus olitorius cultivar O-4 contig22553, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73251

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11843--12035	42	4.6	42	87	3	273	19	13	37	29	1.90
11775--12035	84	3.1	84	82	2	310	21	13	36	29	1.91
11843--12114	42	6.5	41	80	8	224	20	14	36	28	1.92
12095--12364	42	6.4	41	69	8	148	24	13	32	30	1.93
12011--12290	126	2.2	125	80	4	321	24	12	32	30	1.93
12008--12161	84	1.8	84	80	5	186	22	14	32	30	1.94
12163--12371	84	2.5	84	89	0	274	23	12	33	30	1.92
12223--12395	84	2.1	84	83	2	213	21	15	31	30	1.95
19074--19154	39	2.1	39	100	0	162	62	13	12	11	1.54
22504--22542	20	1.9	21	89	5	62	43	28	20	7	1.79
22553--22777	121	1.8	123	83	5	305	34	26	15	24	1.95
34216--34252	7	5.4	7	93	6	67	86	0	13	0	0.57
37453--37500	25	1.9	25	91	8	80	33	18	8	39	1.81
39244--39317	23	3.2	22	75	9	67	37	10	13	37	1.80
39259--39481	22	10.2	22	72	10	145	39	9	17	33	1.82
39666--39997	85	3.9	85	87	5	467	38	27	10	23	1.88
39666--39997	169	2.0	169	88	6	503	38	27	10	23	1.88
40038--40100	2	31.5	2	100	0	126	0	0	49	50	1.00
41623--41740	22	5.5	21	79	5	94	34	13	11	40	1.80
41682--41740	21	2.9	20	84	2	73	27	16	10	45	1.80
45758--45794	8	4.5	8	90	6	56	62	2	0	35	1.10
48505--48535	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55851--55888	2	19.0	2	100	0	76	50	0	0	50	1.00
57697--57835	69	2.0	69	98	0	269	31	10	23	33	1.89
65801--66116	165	1.9	165	90	2	501	29	19	24	27	1.98
65990--66242	129	2.0	129	91	3	411	32	18	23	25	1.98
65821--66737	294	3.0	293	84	8	1074	31	20	22	26	1.98
66115--66750	165	3.9	165	90	2	949	32	20	21	26	1.98
66119--66750	327	1.9	325	90	2	1007	31	20	21	26	1.98

Tables:   1

The End!