Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022579.1 Corchorus olitorius cultivar O-4 contig22612, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45371

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4979--5015
18
2.1
18
89
0
56
45
5
10
37
1.62
5863--5898
19
1.9
18
88
5
54
41
8
22
27
1.82
7008--7116
46
2.4
46
98
0
209
43
11
21
24
1.85
11649--11701
26
2.0
26
100
0
106
3
43
26
26
1.72
18565--18655
31
3.0
30
80
7
94
17
8
25
48
1.76
18597--18663
31
2.2
30
81
2
80
11
11
23
52
1.71
19064--19119
21
2.7
21
80
2
69
39
7
42
10
1.67
20329--20373
11
4.2
11
82
2
56
44
13
17
24
1.85
21044--21193
53
2.8
53
88
5
232
30
11
18
40
1.86
27374--27781
200
2.0
199
87
6
585
37
13
14
34
1.86
31267--31301
18
2.0
18
88
5
54
25
0
8
65
1.21
31462--31503
20
2.0
21
86
4
59
59
2
14
23
1.47
32109--32143
1
35.0
1
100
0
70
100
0
0
0
0.00
34642--34673
16
2.1
16
94
5
57
40
12
6
40
1.68
34670--34719
26
1.9
26
84
8
66
10
14
6
70
1.33
34688--34728
18
2.4
17
83
4
55
4
14
4
75
1.14
42028--42073
24
1.9
24
86
0
65
17
32
17
32
1.93
42937--42985
25
2.0
25
87
0
71
16
30
16
36
1.91
43292--43340
7
7.0
7
100
0
98
28
28
0
42
1.56
42382--44184
938
1.9
913
93
2
3075
34
26
10
28
1.89

Tables:   1

The End!