Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022681.1 Corchorus olitorius cultivar O-4 contig22714, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44400

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10048--10096
25
2.0
25
87
0
71
38
20
26
14
1.91
10952--11000
25
2.0
25
95
0
89
36
20
30
12
1.89
11498--11557
32
1.9
31
86
6
86
21
40
11
26
1.88
16236--16272
18
2.0
19
89
5
58
13
10
10
64
1.49
25766--25917
76
2.0
76
82
7
184
17
29
28
24
1.97
31571--31631
30
2.0
31
96
3
115
40
13
13
32
1.82
32101--32139
17
2.3
17
95
0
69
51
10
7
30
1.64
32389--32434
18
2.6
18
89
3
67
80
2
10
6
0.98
32763--33323
40
14.2
39
82
5
294
38
11
20
29
1.88
32763--33212
80
5.6
80
86
4
518
38
10
20
31
1.86
32763--33212
120
3.8
119
83
5
473
38
10
20
31
1.86
32911--33212
40
7.6
40
89
3
466
37
8
21
32
1.84
33374--34042
146
4.6
147
90
4
1041
35
17
20
26
1.95
34973--35003
15
2.1
15
93
0
53
6
25
6
61
1.45
35294--35335
19
2.3
19
79
4
50
14
19
2
64
1.39
35314--35363
26
2.0
26
84
4
66
6
8
8
78
1.11

Tables:   1

The End!