Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022696.1 Corchorus olitorius cultivar O-4 contig22729, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20477

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--32
2
16.0
2
100
0
64
50
0
0
50
1.00
1861--1896
3
12.0
3
93
0
63
36
0
0
63
0.94
2814--3084
141
1.9
141
92
0
452
32
9
22
35
1.87
8124--8157
17
1.9
18
94
5
61
70
0
26
2
1.01
8112--8168
21
2.8
20
80
15
62
73
0
24
1
0.92
8112--8166
15
3.6
15
80
17
60
72
0
25
1
0.94
10099--10329
19
12.4
19
69
19
105
63
1
8
26
1.30
10095--10321
23
9.2
26
69
22
143
63
1
7
26
1.29
10097--10252
46
3.4
46
97
0
285
63
0
7
28
1.25
10033--10321
8
38.5
8
71
13
125
62
1
8
26
1.34
10162--10324
76
2.1
75
87
4
236
64
1
7
26
1.28
10126--10281
30
5.1
30
75
10
138
63
0
8
27
1.27
14016--14335
54
6.0
55
84
4
352
31
24
17
26
1.97
14016--14335
107
3.0
109
80
3
373
31
24
17
26
1.97
14290--14441
43
3.8
42
78
16
187
32
23
15
28
1.95
14331--14472
33
4.0
33
78
16
158
32
23
16
27
1.96
14290--14485
76
2.6
76
94
0
329
32
24
15
27
1.96

Tables:   1

The End!