Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022713.1 Corchorus olitorius cultivar O-4 contig22746, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71790

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--37
2
18.0
2
100
0
72
50
0
0
50
1.00
1206--1262
28
2.0
28
100
0
114
47
10
10
31
1.72
3593--3668
29
2.5
31
82
6
102
30
9
28
31
1.88
4147--4192
3
15.3
3
100
0
92
32
0
0
67
0.91
4880--4921
22
1.9
22
85
9
59
33
2
14
50
1.56
7148--7300
75
2.0
75
100
0
306
39
16
15
28
1.89
8844--8893
15
3.4
14
83
8
64
12
28
24
36
1.91
10095--10165
18
3.9
18
70
7
54
12
19
39
28
1.88
17515--17634
64
1.9
64
94
0
213
23
32
17
26
1.97
17516--17621
32
3.3
32
75
5
124
20
32
17
29
1.96
17940--17998
24
2.5
24
91
5
93
23
8
16
50
1.72
34798--34838
21
2.0
21
95
0
73
21
7
36
34
1.82
37297--37393
31
3.1
31
92
2
160
49
12
15
22
1.78
37360--37478
38
3.1
39
84
7
147
48
17
12
21
1.80
37581--38137
169
3.3
169
89
1
805
35
15
19
30
1.93
38241--38390
69
2.2
69
80
4
178
29
17
26
27
1.97
40275--40323
13
3.7
13
88
2
71
42
12
10
34
1.76
40381--40435
10
4.9
12
72
14
55
9
16
0
74
1.06
40374--40435
22
2.8
21
76
13
63
9
16
0
74
1.07
46431--46469
19
2.1
19
100
0
78
41
33
5
20
1.74
46862--46902
21
2.0
21
90
0
64
24
7
34
34
1.83
52097--52168
26
2.7
27
84
4
101
37
25
18
19
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60801--60887
4
21.8
4
97
0
165
50
25
0
24
1.49

Tables:   1

The End!