Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022975.1 Corchorus olitorius cultivar O-4 contig23008, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22022

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9417--9487
27
2.6
27
93
0
115
18
21
25
35
1.95
14660--14684
7
3.6
7
100
0
50
28
28
12
32
1.92
17523--17555
2
16.5
2
93
0
57
45
0
3
51
1.16
17957--17992
17
2.2
17
90
5
56
55
5
8
30
1.52
17974--18014
13
3.1
13
89
3
55
36
7
12
43
1.70
18636--18668
9
3.5
10
88
12
52
81
0
0
18
0.68
19569--19633
26
2.5
26
89
2
94
20
21
16
41
1.90
19597--20242
35
18.1
35
82
4
749
19
20
17
42
1.89
19597--20242
71
9.1
70
82
5
715
19
20
17
42
1.89
19597--20242
106
6.0
106
81
5
739
19
20
17
42
1.89
20207--20259
26
2.0
26
92
0
88
15
20
20
43
1.88
20209--20268
26
2.3
26
88
0
84
16
18
23
41
1.90
20430--20657
70
3.2
68
90
6
348
26
28
15
29
1.96
20947--21020
38
1.9
38
88
0
112
16
13
17
52
1.74
20980--21046
30
2.2
30
91
0
116
17
13
17
50
1.77
21079--21155
30
2.6
30
85
0
91
23
19
16
40
1.91
21610--21676
27
2.5
27
90
0
98
20
19
22
37
1.95

Tables:   1

The End!