genome.fa.s22977.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022977.1 Corchorus olitorius cultivar O-4 contig23010, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56136

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126--180	24	2.3	24	100	0	110	41	7	3	47	1.49
12048--12118	21	3.4	21	94	3	117	28	18	26	26	1.98
13561--13613	21	2.5	21	84	0	70	16	45	22	15	1.85
13972--14043	26	2.7	27	80	4	74	19	15	26	38	1.91
15627--15658	16	2.0	16	93	0	55	9	21	12	56	1.64
16277--16350	38	1.9	38	94	0	130	40	24	9	25	1.85
19836--19882	26	1.9	24	87	12	69	40	4	27	27	1.75
21260--21369	31	3.5	31	92	2	150	35	9	20	35	1.84
21876--21921	15	3.4	15	72	27	57	17	28	30	23	1.97
21853--21940	25	3.5	25	90	3	124	19	26	31	22	1.98
23025--23062	2	19.0	2	94	0	67	47	0	0	52	1.00
23339--23436	31	3.2	31	92	0	169	36	18	9	35	1.83
23339--23448	31	3.5	29	83	11	130	36	20	8	35	1.82
23339--23478	31	4.5	31	79	8	115	38	19	8	33	1.82
23339--23478	62	2.3	61	84	9	169	38	19	8	33	1.82
25657--25693	2	18.5	2	94	0	65	45	0	2	51	1.15
33667--33706	18	2.2	18	86	4	53	45	5	20	30	1.72
34118--34189	26	2.7	27	80	2	92	18	16	23	41	1.89
34663--34701	20	2.0	20	94	0	69	28	12	17	41	1.87
34768--34792	1	25.0	1	100	0	50	100	0	0	0	0.00
48681--48728	21	2.3	22	82	10	64	31	12	2	54	1.49
48865--48894	16	1.9	15	93	6	51	26	20	3	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48905--49878	26	36.6	26	69	17	345	31	20	1	47	1.59
48905--49878	55	18.3	52	72	16	433	31	20	1	47	1.59
48905--49781	79	11.1	76	73	17	344	31	20	1	46	1.59
49068--49100	14	2.3	15	94	5	59	45	15	0	39	1.46
49042--49124	44	2.0	40	86	9	112	37	20	0	42	1.52
49082--49769	28	25.5	27	71	17	327	33	20	1	45	1.59
49166--49208	19	2.3	19	88	4	61	30	23	0	46	1.52
49111--49263	72	2.1	74	90	2	238	33	20	0	45	1.51
49082--49318	127	1.9	129	94	1	424	34	20	0	44	1.52
49036--49344	127	2.4	127	78	14	404	34	20	0	44	1.52
49297--49463	90	1.9	89	80	7	194	34	19	1	44	1.59
49449--49487	19	2.1	19	85	0	51	35	20	0	43	1.52
49082--49769	107	6.4	106	79	12	585	33	20	1	45	1.59
49204--49769	213	2.6	217	82	9	629	33	19	1	45	1.59
49459--49923	106	4.3	103	82	10	436	29	18	2	49	1.60
49810--49959	51	2.9	49	81	7	165	24	14	2	58	1.50
49795--49923	26	5.0	26	83	7	140	27	16	2	54	1.54
49645--49984	164	2.1	165	89	1	511	26	17	2	52	1.58
53249--53323	29	2.6	29	100	0	150	53	14	9	22	1.69
55013--55114	50	2.0	50	96	0	186	24	17	13	44	1.85

Tables:   1

The End!