Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023140.1 Corchorus olitorius cultivar O-4 contig23173, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64627

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4498--4555
8
6.8
9
75
20
54
6
17
0
75
1.01
4498--4550
9
6.4
8
78
12
54
5
15
0
79
0.91
4498--4553
16
3.5
15
81
11
67
5
16
0
78
0.92
4492--4553
24
2.6
24
89
5
90
6
16
1
75
1.08
11078--11222
76
1.9
76
81
8
179
16
30
29
23
1.96
17002--17051
21
2.4
21
89
0
73
26
26
20
28
1.99
19384--19434
21
2.4
21
80
0
66
9
29
47
13
1.75
23648--23687
17
2.2
17
86
8
53
32
20
2
45
1.64
26623--27478
435
2.0
436
83
4
1046
42
13
13
30
1.83
30339--30372
17
1.9
18
94
5
61
64
14
8
11
1.49
30739--31100
181
2.0
180
93
0
616
35
11
36
17
1.85
33390--33430
21
2.0
21
85
9
57
36
9
21
31
1.86
40208--40252
2
22.5
2
95
0
81
0
0
48
51
1.00
46102--46171
28
2.7
26
81
12
81
45
14
4
35
1.64
52936--52968
16
2.1
16
88
5
50
69
9
6
15
1.34
55338--55400
27
2.3
27
94
0
108
33
4
15
46
1.67
55349--55406
27
2.1
27
90
0
89
41
6
13
37
1.72
58503--58538
18
2.1
18
89
5
56
47
8
8
36
1.64
62080--62115
18
1.9
18
88
5
54
36
22
2
38
1.69
64217--64291
27
2.7
28
87
4
98
21
13
26
38
1.90
64324--64485
74
2.2
75
94
3
283
30
17
12
39
1.87

Tables:   1

The End!