Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023336.1 Corchorus olitorius cultivar O-4 contig23369, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24613

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
335--364
16
1.9
16
93
6
53
40
0
13
46
1.43
3927--4571
345
1.9
344
81
7
797
29
15
20
34
1.93
16988--17042
27
2.0
27
92
0
92
38
9
23
29
1.85
17012--17488
39
12.3
39
80
8
512
40
10
19
29
1.85
17016--17469
74
5.9
77
82
10
484
40
11
19
29
1.85
17138--17469
113
3.0
112
88
2
472
39
10
19
29
1.86
17531--17597
22
2.8
24
72
14
59
26
16
26
29
1.97
17531--17624
47
2.0
47
85
0
125
26
17
26
29
1.97
17575--17970
153
2.6
152
87
3
575
33
15
20
30
1.94
19233--19267
18
2.0
18
88
5
54
5
25
2
65
1.28
19714--19766
16
3.3
15
76
23
54
1
15
1
81
0.87
19715--19766
19
2.8
18
80
13
61
1
15
1
80
0.88
23528--24613
154
7.1
154
91
2
1713
41
18
19
20
1.91

Tables:   1

The End!