Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023390.1 Corchorus olitorius cultivar O-4 contig23423, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97997

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
203--381
88
2.0
89
94
1
315
32
17
19
29
1.95
656--681
2
13.0
2
100
0
52
50
0
0
50
1.00
1498--1541
2
23.0
2
86
9
65
52
0
2
45
1.13
1498--1541
23
1.9
23
95
0
79
52
0
2
45
1.13
6378--6435
29
2.0
29
100
0
116
41
13
20
24
1.89
11124--11167
19
2.4
18
81
7
52
27
18
15
38
1.91
13859--13924
33
2.0
33
88
5
98
48
0
19
31
1.49
13945--13984
20
2.0
20
90
0
62
45
0
20
35
1.51
13978--14074
41
2.4
40
84
3
140
49
3
18
28
1.63
14013--14161
67
2.2
68
83
6
176
49
2
19
28
1.62
15391--15443
25
2.1
25
86
6
72
0
24
3
71
1.02
20451--20563
21
5.4
21
96
2
201
25
27
18
28
1.98
22281--22385
33
3.2
33
81
8
115
45
21
8
23
1.79
23783--23829
26
1.9
24
87
12
69
40
4
25
29
1.75
24704--24795
21
4.4
21
93
2
150
26
26
18
29
1.98
25814--25853
17
2.4
17
95
0
71
25
7
27
40
1.82
31240--31287
24
2.0
24
100
0
96
29
37
0
33
1.58
31981--32014
17
1.9
18
88
5
52
41
11
0
47
1.40
33187--33256
21
3.3
21
91
0
113
28
17
28
25
1.97
34119--34165
26
1.9
24
87
12
69
27
27
4
40
1.75
34623--34663
21
2.0
21
90
0
64
34
7
26
31
1.84
40220--40262
12
3.3
13
84
9
52
69
4
20
4
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40220--40262
14
3.2
14
87
6
54
69
4
20
4
1.25
42123--42193
21
3.4
21
90
3
108
28
18
25
28
1.98
42366--42495
65
2.0
65
93
0
224
23
26
30
20
1.98
48516--48607
21
4.4
21
93
2
150
29
18
26
26
1.98
52841--52879
20
2.0
20
100
0
78
17
10
25
46
1.80
54154--54223
28
2.5
28
90
0
104
40
28
18
12
1.88
54613--54785
35
4.9
35
92
0
274
28
23
16
30
1.96
69945--69987
5
8.8
5
84
5
61
74
25
0
0
0.82
69945--69987
10
4.4
10
94
2
70
74
25
0
0
0.82
74058--74150
28
3.4
28
86
1
125
37
25
20
16
1.93
74545--74580
18
1.9
18
88
5
54
38
2
22
36
1.69
79889--79920
15
2.2
15
94
5
57
15
15
6
62
1.51
81338--81373
18
1.9
18
88
5
54
38
2
22
36
1.69
81960--81990
16
2.0
16
93
6
55
12
12
12
61
1.58
85621--85662
21
2.0
21
95
0
75
19
16
28
35
1.93
94183--94429
11
23.1
11
67
25
113
25
8
0
66
1.19
94183--94439
19
13.8
19
73
16
184
25
8
0
66
1.19
94249--94483
4
62.5
4
67
15
119
26
6
0
66
1.20
94344--94483
45
3.1
45
88
9
205
26
5
0
67
1.15
94225--94442
81
2.8
78
85
8
277
26
8
0
65
1.22
94249--94472
11
20.0
12
70
21
148
26
7
0
66
1.21
94183--94475
19
16.1
19
71
16
158
25
7
0
66
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94231--94481
81
3.2
81
82
13
260
26
7
0
65
1.22
94533--94564
12
2.5
13
95
5
57
21
3
0
75
0.95

Tables:   1

The End!