Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023582.1 Corchorus olitorius cultivar O-4 contig23615, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20577

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4717--5340
31
19.9
31
89
5
795
47
17
17
17
1.83
4717--5329
123
4.9
122
90
5
790
47
17
17
17
1.83
4717--5340
154
4.0
153
87
6
778
47
17
17
17
1.83
5166--5368
39
5.7
38
81
14
215
46
18
16
18
1.85
5112--5368
138
1.9
138
94
0
451
46
18
15
18
1.84
5136--5378
69
3.5
69
74
22
258
48
18
15
18
1.82
6081--6427
36
9.5
36
78
7
337
41
19
19
19
1.90
6081--6427
71
4.8
72
80
8
355
41
19
19
19
1.90
6263--6417
78
2.0
78
82
2
186
43
18
18
18
1.88
9117--9166
26
2.0
26
88
4
75
12
8
16
64
1.49
15529--15570
15
2.7
15
85
3
57
11
9
9
69
1.38

Tables:   1

The End!