Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023759.1 Corchorus olitorius cultivar O-4 contig23792, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53787

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9809--9842
2
17.0
2
100
0
68
50
0
0
50
1.00
12411--12452
21
2.0
21
95
0
75
28
2
14
54
1.52
12417--12458
21
2.0
21
90
0
66
30
7
14
47
1.71
15410--15565
78
2.0
78
100
0
312
32
12
16
38
1.87
19554--19634
40
2.0
40
100
0
162
32
7
14
45
1.73
21666--21844
85
2.1
85
91
0
295
50
1
12
35
1.48
22195--22230
13
2.7
13
91
4
54
33
5
19
41
1.75
25600--25725
22
5.7
22
76
9
96
40
8
10
40
1.70
25581--25725
44
3.3
45
82
6
172
40
8
11
38
1.73
27114--27170
29
1.9
30
89
3
89
42
10
21
26
1.85
28788--28831
23
1.9
23
85
0
61
20
6
2
70
1.21
32419--32452
2
17.0
2
100
0
68
50
0
0
50
1.00
35052--35221
68
2.5
68
99
0
333
32
14
8
44
1.74
35386--35441
29
1.9
29
88
0
85
35
17
26
19
1.94
35683--35759
29
2.7
28
78
13
93
41
27
12
18
1.87
37135--37230
31
3.0
31
77
8
104
26
23
19
30
1.98
37186--37248
29
2.1
30
82
5
74
31
19
15
33
1.93
40165--40235
12
6.0
12
75
8
56
9
39
39
11
1.74
40446--40516
3
23.7
3
97
0
133
30
0
1
67
0.99
44828--44901
28
2.7
27
74
12
78
39
12
22
25
1.89
45871--45906
3
12.0
3
87
0
54
0
38
0
61
0.96
46599--46666
3
22.7
3
96
0
127
30
0
1
67
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52229--52268
21
1.9
21
84
0
53
32
0
10
57
1.32
52721--53746
438
2.3
431
81
5
1177
29
14
13
42
1.84

Tables:   1

The End!