Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023852.1 Corchorus olitorius cultivar O-4 contig23885, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78486

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2000--2065
34
1.9
35
87
9
100
25
18
15
40
1.89
2054--2478
26
16.6
26
94
1
684
28
11
27
32
1.92
2054--3197
52
22.3
52
89
5
1572
27
11
27
32
1.92
2054--3197
154
7.4
154
87
7
1630
27
11
27
32
1.92
2437--2508
37
2.0
35
94
5
126
27
11
30
30
1.91
2472--3197
26
27.7
26
85
5
901
27
12
28
32
1.92
2758--2792
18
1.9
18
94
0
61
25
14
37
22
1.92
2732--2966
44
5.0
44
80
15
222
26
12
30
30
1.93
3201--7189
332
12.1
331
84
4
4670
33
13
16
36
1.88
3201--7216
661
6.1
662
83
5
4681
33
13
16
36
1.88
3201--7196
993
4.0
993
85
4
4973
33
13
16
36
1.88
9573--9612
20
2.0
20
95
0
71
50
7
15
27
1.70
10286--10363
39
2.0
39
89
0
120
43
21
26
7
1.80
10326--10387
30
2.1
30
96
0
115
45
16
33
4
1.68
10359--10692
62
5.4
62
98
0
650
34
22
39
3
1.71
10669--10714
24
1.9
24
100
0
92
45
21
28
4
1.71
11567--11666
45
2.2
45
87
0
137
30
20
26
24
1.98
39990--40055
30
2.2
31
91
2
107
53
4
7
34
1.50
55156--55211
21
2.8
19
81
5
67
30
21
10
37
1.87
61217--61291
31
2.4
31
90
0
123
44
14
14
26
1.84
61167--61346
91
2.0
91
83
2
227
39
16
14
29
1.88
77676--77710
16
2.2
16
100
0
70
22
5
0
71
1.07

Tables:   1

The End!