Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023856.1 Corchorus olitorius cultivar O-4 contig23889, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33337

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108--153
2
23.5
2
95
4
85
47
0
0
52
1.00
5352--5740
217
1.8
215
83
5
516
32
18
13
35
1.89
6623--6665
18
2.3
19
96
4
79
18
6
4
69
1.29
12063--12092
12
2.4
13
94
5
53
56
0
0
43
0.99
14872--14913
20
2.2
20
86
4
59
21
9
7
61
1.50
15419--16757
332
4.0
332
80
6
1389
34
14
15
36
1.87
16368--17337
512
1.9
511
86
1
1388
33
15
14
36
1.88
17597--21295
332
10.9
331
78
9
3148
32
14
17
35
1.90
16845--19640
665
4.3
662
82
6
2710
32
14
16
35
1.90
19667--19844
99
1.8
99
82
6
236
31
8
19
39
1.83
19744--22761
665
4.6
661
83
8
3540
32
14
18
34
1.91
21018--21581
282
2.0
282
93
3
965
33
15
18
33
1.92
20353--22246
947
2.0
948
92
1
3201
32
14
17
34
1.91
21299--22766
333
4.5
332
87
4
1833
33
14
17
34
1.91
22774--24277
324
4.6
328
78
9
1472
32
13
15
37
1.88
22774--24277
658
2.3
649
83
5
1880
32
13
15
37
1.88
25131--25159
14
2.0
15
93
6
51
48
3
0
48
1.18
25202--25241
20
2.0
21
85
5
55
60
2
0
37
1.11

Tables:   1

The End!