Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01023883.1 Corchorus olitorius cultivar O-4 contig23916, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28066

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
513--547
12
2.9
12
86
0
52
54
2
0
42
1.15
11801--11864
33
1.9
33
100
0
128
48
18
6
26
1.72
13676--18355
650
7.2
652
80
8
4428
32
15
17
35
1.91
13676--18355
319
14.3
330
80
7
4626
32
15
17
35
1.91
18173--18558
204
1.9
203
81
4
465
30
17
17
33
1.94
18373--19272
335
2.6
336
85
7
1187
33
15
15
35
1.90
19121--19433
156
2.0
158
82
3
382
28
20
17
33
1.96
19279--19919
331
1.9
322
81
7
691
33
14
17
34
1.90
19960--22411
331
7.3
331
84
4
3039
32
14
18
35
1.90
22190--22641
223
2.0
223
86
5
635
32
16
19
32
1.93
21865--22949
558
1.9
555
87
2
1584
31
15
18
33
1.93
22412--24219
334
5.4
333
86
3
2366
31
16
17
34
1.92
22410--24219
663
2.7
664
86
4
2501
31
16
17
34
1.92
24594--26502
967
2.0
948
82
6
2349
32
15
17
35
1.90
25536--26956
343
4.2
339
82
5
1636
33
14
16
34
1.90
25536--26892
673
2.0
673
84
3
1809
33
14
16
34
1.90
26956--28066
340
3.3
339
82
5
1349
33
15
16
34
1.90

Tables:   1

The End!