Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024069.1 Corchorus olitorius cultivar O-4 contig24102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46553

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
327--393
21
2.8
25
72
21
63
44
1
1
52
1.19
1213--1274
31
1.9
33
83
9
83
70
1
11
16
1.23
6902--7856
436
2.2
436
82
3
1157
31
13
12
42
1.81
8302--8344
16
2.7
16
75
13
52
37
37
16
9
1.81
8334--8388
23
2.4
23
87
3
76
27
49
23
0
1.51
10225--10281
29
2.0
29
82
6
71
45
3
3
47
1.37
10420--10493
32
2.3
33
83
4
107
36
36
14
12
1.84
10434--10523
16
5.7
16
67
12
60
37
36
15
10
1.81
12887--12946
2
30.0
2
100
0
120
50
50
0
0
1.00
19996--20062
34
2.0
34
100
0
134
28
11
17
41
1.85
23545--23671
66
1.9
66
85
3
175
25
7
22
43
1.80
23557--23686
33
3.9
33
76
4
129
26
7
21
44
1.79
28086--28305
21
10.6
21
79
3
205
28
11
30
30
1.91
30152--30243
34
2.6
35
91
6
141
31
18
16
33
1.93
30305--30379
37
2.0
39
89
5
118
29
17
16
37
1.91
30152--30637
42
11.8
41
77
12
319
34
15
16
34
1.90
30227--30622
86
4.7
86
76
11
315
33
15
16
34
1.90
30393--30634
129
1.9
129
88
3
371
33
14
15
35
1.89
30155--30637
86
5.9
85
75
14
308
34
15
15
34
1.90
31385--31440
22
2.4
23
80
16
71
48
26
14
10
1.76
33629--33675
25
2.0
24
91
8
78
42
14
31
10
1.80
34293--34349
22
2.6
21
80
5
69
52
12
12
22
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34523--34602
33
2.4
33
87
4
108
28
22
25
23
1.99
34523--34612
33
2.7
33
84
6
103
28
23
24
23
1.99
36805--36864
30
2.0
29
84
9
77
23
6
46
23
1.75
38664--38745
29
2.8
30
84
3
112
43
25
14
15
1.85
39195--40143
30
31.1
30
82
8
917
49
17
13
20
1.79
40531--40985
69
6.6
69
96
0
829
28
15
29
26
1.96
42646--42671
9
2.9
9
100
0
52
11
0
19
69
1.18
43063--43094
9
3.7
9
95
4
57
9
12
0
78
0.97
43063--43092
8
3.6
8
91
8
51
10
10
0
80
0.92

Tables:   1

The End!