Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024075.1 Corchorus olitorius cultivar O-4 contig24108, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47581

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
816--864
20
2.5
19
75
15
55
51
0
2
46
1.12
9115--9219
52
2.0
52
92
0
174
32
24
8
34
1.86
9776--9808
16
2.1
16
94
0
57
51
9
0
39
1.34
9775--9811
16
2.4
15
86
8
56
54
10
0
35
1.36
10014--10050
19
2.0
19
94
5
67
32
0
0
67
0.91
11489--11594
16
6.7
16
74
7
92
6
14
39
39
1.72
11489--11594
32
3.3
32
85
1
133
6
14
39
39
1.72
11732--11778
13
3.8
12
78
13
51
55
4
0
40
1.19
12343--12379
2
19.5
2
83
10
51
45
2
0
51
1.15
12564--12608
23
2.0
23
86
0
63
4
24
48
22
1.68
14326--14372
20
2.3
22
78
14
55
42
4
2
51
1.33
15084--15188
32
3.3
32
85
2
140
43
14
8
33
1.75
18461--18521
26
2.3
27
94
2
106
11
21
27
39
1.88
21132--21887
47
16.2
47
87
3
1066
47
4
18
29
1.69
25408--25478
21
3.4
21
94
3
117
26
26
18
28
1.98
30867--30913
26
1.9
24
87
12
69
40
4
27
27
1.75
31783--31874
21
4.4
21
95
2
159
26
27
18
28
1.98
32858--32931
35
2.1
35
92
0
121
29
16
13
40
1.86
41793--41859
27
2.5
27
92
2
109
13
20
28
37
1.91
44872--45494
47
13.3
47
90
1
950
47
4
19
28
1.70

Tables:   1

The End!