genome.fa.s24121.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024121.1 Corchorus olitorius cultivar O-4 contig24154, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97395

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2950--3030	42	1.9	42	92	0	135	45	14	8	30	1.75
3096--3210	57	2.0	57	94	1	205	40	1	24	33	1.65
3395--3429	2	17.5	2	100	0	70	48	0	0	51	1.00
11355--11403	25	1.9	25	83	4	62	40	10	10	38	1.73
14845--14881	12	3.2	12	88	3	58	75	8	8	8	1.19
15460--15509	24	2.1	24	96	0	91	18	12	20	50	1.78
16119--16353	37	6.6	36	75	14	209	27	17	20	34	1.95
16119--16353	72	3.3	69	77	13	251	27	17	20	34	1.95
16223--16396	39	4.6	39	70	17	125	26	16	19	37	1.93
23566--23608	22	2.0	21	90	9	68	41	9	0	48	1.35
24024--24105	32	2.5	34	82	7	89	19	3	32	43	1.68
24084--24108	6	4.2	6	100	0	50	16	0	36	48	1.46
24059--24128	34	2.1	34	86	5	97	17	2	31	48	1.61
26417--26531	57	2.0	57	91	3	187	33	23	0	42	1.60
27355--27800	221	2.0	221	89	3	691	34	21	9	34	1.85
31275--31365	42	2.2	42	94	2	157	35	5	19	39	1.75
31436--31503	34	2.0	34	100	0	136	29	20	11	38	1.88
40291--40465	35	4.9	35	82	13	182	28	17	9	44	1.79
40291--40610	71	4.5	70	76	12	224	25	16	10	46	1.79
40301--41615	36	36.2	36	79	8	851	23	16	12	47	1.81
40301--41615	110	12.1	108	79	9	787	23	16	12	47	1.81
40301--41615	74	18.1	72	80	7	912	23	16	12	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54158--54454	69	4.3	70	92	3	435	26	28	16	27	1.97
54583--55107	169	3.1	169	89	1	739	28	20	17	33	1.95
55070--55112	20	2.2	20	87	8	61	23	23	18	34	1.96
55147--55839	30	20.9	30	72	15	380	20	14	17	47	1.82
55138--55257	38	3.2	38	92	0	195	19	14	17	49	1.80
55381--55471	34	2.6	34	86	5	112	20	14	16	48	1.81
55194--55702	203	2.6	194	78	9	494	19	14	18	47	1.83
55646--55737	34	2.7	33	83	8	114	19	16	16	47	1.82
55388--55835	137	3.3	132	78	8	476	20	15	17	46	1.84
63515--63563	21	2.3	21	85	3	62	18	53	22	6	1.66
63800--63849	21	2.4	21	86	3	66	18	50	22	10	1.76
64027--64242	108	2.0	108	100	0	432	33	15	29	21	1.94
64524--64556	16	2.1	16	100	0	66	39	18	6	36	1.75
66382--66407	11	2.4	11	100	0	52	7	15	7	69	1.35
67169--67211	16	2.7	15	78	7	50	23	9	6	60	1.51
67775--67816	21	2.0	22	90	4	68	19	23	11	45	1.83
68912--68941	14	2.1	15	93	6	53	43	6	16	33	1.74
80977--81224	37	7.0	36	84	8	128	24	16	11	47	1.80
80984--82120	74	15.6	71	81	7	912	23	17	12	45	1.83
80984--82120	146	7.8	143	80	7	916	23	17	12	45	1.83
80984--82120	36	31.3	35	82	7	887	23	17	12	45	1.83
80984--82120	110	10.4	109	79	9	756	23	17	12	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85649--85757	54	2.0	54	96	0	200	34	10	14	40	1.80

Tables:   1

The End!