Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024371.1 Corchorus olitorius cultivar O-4 contig24404, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34943

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
167--208
15
2.7
15
92
3
66
64
14
9
11
1.50
2047--2402
35
10.0
35
82
6
403
40
19
13
25
1.89
2367--2472
54
2.0
54
94
0
185
31
23
17
27
1.97
6871--6900
4
7.5
4
100
0
60
76
0
0
23
0.78
10499--10555
21
2.7
21
72
0
60
8
33
14
43
1.76
14761--14870
19
5.5
19
71
21
73
62
0
8
28
1.29
14793--14893
11
8.7
11
71
18
62
62
0
9
27
1.27
14839--14943
25
4.4
25
74
23
93
65
0
8
24
1.26
14760--14940
44
4.2
44
84
10
241
63
1
8
26
1.30
14760--14897
4
35.5
4
65
16
58
63
0
8
26
1.28
21736--21830
41
2.3
41
83
0
109
26
14
10
48
1.76
26278--26360
28
2.9
28
81
11
98
40
28
14
15
1.87
26880--27547
30
22.1
30
88
2
935
46
20
14
18
1.84
27705--27771
20
3.0
22
70
17
57
29
19
22
28
1.98
29593--29666
6
12.7
6
94
1
107
13
1
12
72
1.18
29598--29674
6
12.7
6
90
2
64
14
1
10
74
1.14
29669--29703
13
2.7
13
95
0
61
17
0
11
71
1.14
30100--30145
8
5.9
8
79
5
58
15
15
0
69
1.19
30103--30145
15
2.9
14
89
10
59
13
16
0
69
1.19
30100--30144
23
2.0
23
86
0
63
15
15
0
68
1.21
33936--33967
1
32.0
1
100
0
64
100
0
0
0
0.00

Tables:   1

The End!