Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024420.1 Corchorus olitorius cultivar O-4 contig24453, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33041

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4173--4199
1
27.0
1
100
0
54
100
0
0
0
0.00
5305--5331
14
1.9
14
100
0
54
29
18
0
51
1.46
5632--5751
21
5.6
21
74
16
102
31
7
17
43
1.77
5767--5865
27
4.0
27
71
22
99
42
7
16
34
1.75
5632--6000
22
16.9
21
71
14
180
35
9
17
37
1.83
5794--6026
22
10.7
22
66
21
73
37
10
17
34
1.84
6038--6744
22
32.5
22
66
14
159
36
8
17
38
1.80
6434--6623
89
2.1
89
80
7
217
38
6
16
37
1.75
6763--6822
22
2.7
22
78
0
66
41
8
15
35
1.77
6965--6991
2
13.5
2
100
0
54
48
0
0
51
1.00
9135--9189
27
2.2
26
87
9
78
16
10
20
52
1.73
9147--9195
27
1.9
25
88
12
73
14
10
18
57
1.65
13033--13100
35
2.0
34
85
5
93
69
11
7
11
1.37
16146--16216
34
2.1
35
86
7
101
32
12
11
43
1.78
21377--21433
23
2.5
23
91
0
96
56
14
14
15
1.68
23065--23098
3
11.7
3
93
6
61
0
32
0
67
0.91
27573--27634
30
2.1
31
84
6
83
22
16
16
45
1.85
29273--29312
21
1.9
21
94
0
71
7
20
0
72
1.08
29788--29828
19
2.1
20
86
4
57
70
9
0
19
1.14
32939--32972
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!