Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024441.1 Corchorus olitorius cultivar O-4 contig24474, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15745

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
840--1033
69
2.8
68
92
4
300
42
13
5
38
1.69
3321--4076
36
21.6
35
76
14
541
25
17
11
45
1.82
3321--4076
71
10.8
70
76
13
559
25
17
11
45
1.82
3825--3875
25
2.0
26
88
3
77
23
17
17
41
1.90
3761--4053
96
2.9
95
74
15
250
24
16
13
46
1.82
3321--4076
142
5.4
137
83
8
720
25
17
11
45
1.82
4504--4595
36
2.6
36
84
3
114
28
15
10
45
1.79
4538--4612
36
2.1
36
82
0
87
26
16
9
48
1.76
6256--6280
2
12.5
2
100
0
50
48
0
0
52
1.00
11222--11258
18
2.1
18
94
0
65
51
18
0
29
1.47
11339--11386
23
2.1
23
96
0
87
52
8
10
29
1.65
11978--12013
17
2.1
17
90
10
56
58
2
0
38
1.13

Tables:   1

The End!