Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024451.1 Corchorus olitorius cultivar O-4 contig24484, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66128

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1603--2522
47
19.0
47
82
9
938
50
6
20
22
1.72
1603--2522
195
4.8
188
83
7
930
50
6
20
22
1.72
1603--2491
294
3.1
281
83
8
1009
50
6
20
22
1.71
2540--2669
22
6.0
22
88
1
190
58
6
23
11
1.57
2541--2665
65
1.9
66
91
1
207
58
7
22
12
1.58
2643--2743
47
2.2
45
82
8
116
54
4
20
19
1.63
10798--10838
20
2.0
22
90
9
68
34
19
24
21
1.97
10799--10847
20
2.3
20
83
13
55
30
24
26
18
1.98
15203--15232
2
15.0
2
100
0
60
50
0
0
50
1.00
16346--16658
153
2.0
154
97
0
592
22
16
15
44
1.86
19943--20027
39
2.2
39
82
4
100
11
20
21
47
1.81
20028--20063
18
2.0
18
100
0
72
33
16
22
27
1.95
20884--20987
51
2.0
51
88
3
156
28
26
10
33
1.90
22138--22205
29
2.3
29
92
0
100
25
11
22
41
1.87
30651--30701
22
2.3
22
86
3
66
19
5
25
49
1.71
31206--31236
12
2.6
12
94
0
53
51
29
19
0
1.47
34451--34590
73
1.9
73
97
0
262
27
27
13
31
1.94
35905--35941
19
2.0
19
89
5
58
35
0
0
64
0.94
36740--36820
2
40.5
2
89
0
126
4
45
0
49
1.23
42861--42903
15
2.8
15
85
3
50
34
9
6
48
1.62
44014--44100
44
2.0
44
95
0
156
43
9
20
26
1.82
44179--44276
41
2.4
40
81
5
115
40
22
11
25
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47835--47870
1
36.0
1
100
0
72
100
0
0
0
0.00
48730--48808
39
2.0
39
92
0
131
41
10
18
29
1.83
48891--48991
44
2.4
41
81
8
114
39
21
10
27
1.87
49530--49563
10
3.4
10
87
0
50
50
38
8
2
1.49
49563--49589
2
13.5
2
100
0
54
51
0
0
48
1.00
50578--50803
22
10.2
22
67
17
110
39
8
14
37
1.78
50863--50891
2
14.5
2
100
0
58
48
0
0
51
1.00
51230--51272
20
2.2
20
91
4
70
20
23
16
39
1.92
53008--53050
21
2.1
20
91
4
68
27
25
13
32
1.94
58258--58322
32
2.0
32
85
5
87
35
6
15
43
1.72
58538--58570
15
2.1
16
88
11
50
27
27
21
24
1.99
60404--60439
18
2.0
18
100
0
72
38
5
5
50
1.49
61262--61290
2
14.5
2
100
0
58
48
0
0
51
1.00
64023--64436
30
13.7
31
90
3
503
28
22
21
27
1.99

Tables:   1

The End!