genome.fa.s24482.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024482.1 Corchorus olitorius cultivar O-4 contig24515, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73048

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
942--1000	25	2.4	24	81	13	66	42	6	3	47	1.46
940--980	10	4.1	10	90	0	64	43	7	2	46	1.44
1903--2144	41	5.9	41	84	4	308	29	14	19	37	1.90
2240--2274	16	2.2	16	94	0	61	14	25	14	45	1.82
25672--25722	23	2.2	23	92	0	84	50	5	7	35	1.55
25761--25848	44	2.0	44	93	0	149	28	20	9	42	1.82
42509--42583	22	3.4	22	79	3	89	37	9	10	42	1.72
42583--42689	23	4.9	22	80	7	119	34	17	8	39	1.80
42911--42952	2	20.5	2	90	4	66	47	2	2	47	1.28
53278--53310	14	2.3	15	89	5	50	51	3	0	45	1.16
53916--53948	17	1.9	17	93	0	57	69	0	0	30	0.88
57076--57125	12	4.4	12	80	14	70	34	6	14	46	1.69
57074--57113	21	1.9	21	100	0	80	37	5	12	45	1.64
57642--57693	23	2.4	21	84	15	70	42	3	0	53	1.19
62105--62166	30	2.1	30	93	0	106	53	24	1	20	1.55
62938--62981	2	22.0	2	100	0	88	50	0	0	50	1.00
64433--64484	13	3.9	13	76	14	61	44	23	25	7	1.79
64720--64768	13	3.7	13	81	13	55	46	22	14	16	1.82
64794--64836	13	2.8	17	70	29	51	25	13	41	18	1.88
64823--64893	19	3.6	19	84	3	88	26	18	35	19	1.95
66580--67383	438	1.8	436	83	4	1064	30	13	14	42	1.83
70893--70962	36	1.9	36	91	0	113	21	10	8	60	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72058--72093	6	5.8	6	90	3	54	52	0	11	36	1.37

Tables:   1

The End!