Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024648.1 Corchorus olitorius cultivar O-4 contig24681, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15813

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
680--741
27
2.3
26
84
15
74
45
0
8
46
1.32
1456--1781
178
1.8
178
86
3
469
34
16
14
34
1.89
4104--4141
19
2.0
20
84
5
51
26
5
2
65
1.27
4304--4521
66
3.3
68
82
8
252
33
9
18
37
1.84
4306--4526
22
10.0
21
74
7
145
34
9
18
37
1.83
4544--4691
22
6.7
22
75
9
113
36
7
16
39
1.76
4544--4705
66
2.5
65
75
12
168
38
6
16
38
1.75
4831--4955
22
5.7
22
73
5
101
42
10
12
34
1.77
5123--5284
60
2.7
60
92
1
263
34
18
19
27
1.95
5119--5284
31
5.5
30
69
16
110
33
18
19
27
1.96
5154--5254
29
3.4
28
70
16
96
32
19
20
26
1.97
5328--5489
31
5.4
30
65
19
95
27
19
19
33
1.96
5323--5488
60
2.8
60
88
0
269
27
19
19
33
1.96
5601--5707
23
4.7
23
74
8
78
37
8
16
37
1.79
5669--5737
22
3.1
22
83
4
77
34
10
17
37
1.83
5843--5972
22
6.0
22
70
5
93
42
8
14
34
1.76
7780--7847
32
2.1
32
91
0
109
25
16
25
33
1.95
8480--8532
20
2.6
20
81
3
61
28
28
22
20
1.99
13775--13811
18
2.0
20
89
10
60
56
2
16
24
1.53

Tables:   1

The End!