Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009705.1 Corchorus olitorius cultivar O-4 contig09737, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3890

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
435--497
26
2.3
28
84
10
78
42
7
0
49
1.32
1133--1207
22
3.4
22
81
3
69
30
9
17
42
1.80
1145--1499
22
16.0
22
70
11
98
39
10
14
34
1.81
1266--1497
22
10.5
23
74
12
132
42
9
14
33
1.78
1598--1785
22
8.8
21
72
15
127
40
10
11
37
1.76
1616--1785
84
2.0
83
82
13
206
40
10
12
37
1.76
1599--1760
44
3.8
43
85
11
208
40
9
11
38
1.75
1439--1989
287
1.9
288
97
0
1050
38
8
15
37
1.79
1866--2337
22
21.6
22
68
13
156
40
9
14
35
1.78
2055--2138
23
3.7
23
87
1
107
40
7
14
38
1.73
2055--2158
45
2.3
45
81
3
120
39
9
14
36
1.79
2319--2426
22
4.9
22
70
4
74
47
9
10
33
1.69
2254--2440
66
2.8
65
73
10
166
42
10
13
32
1.79
2393--2440
22
2.2
22
85
7
62
47
10
16
25
1.78
3225--3277
16
3.3
16
79
10
72
7
13
37
41
1.72

Tables:   1

The End!