genome.fa.s104.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167929.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_192, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53804

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
736--1809	182	5.9	181	80	6	1016	40	8	9	41	1.68
763--1805	363	2.9	359	80	4	1125	39	8	9	42	1.68
1859--11458	181	53.4	180	73	10	4257	40	8	9	41	1.68
2361--3726	725	1.9	709	80	6	1574	38	8	10	42	1.70
4539--4563	12	2.1	12	100	0	50	32	8	8	52	1.60
4711--5094	180	2.1	180	78	5	400	40	10	10	39	1.73
1860--11459	362	26.7	361	74	9	5493	40	8	9	41	1.68
6579--6918	164	2.1	165	82	5	409	40	6	10	42	1.65
11402--11516	62	1.9	61	85	7	164	33	6	5	54	1.47
11218--11656	237	1.8	237	80	3	533	37	7	9	45	1.66
11460--12338	181	4.9	180	77	6	789	38	8	9	43	1.67
12544--14093	181	8.6	180	79	6	1398	41	8	9	40	1.68
12366--15053	539	5.0	537	77	9	2155	41	8	9	40	1.67
14117--15055	182	5.2	180	73	10	501	41	7	9	41	1.65
14429--14749	171	1.9	172	80	3	387	42	7	9	40	1.66
15196--15732	275	2.0	275	82	3	652	39	9	9	42	1.68
15465--18410	181	16.4	178	75	9	1977	41	9	8	40	1.67
15466--18410	363	8.2	359	74	8	2111	41	9	8	40	1.67
17061--17384	166	2.0	167	79	7	365	42	9	8	40	1.66
17212--18429	179	6.7	180	77	5	1041	41	9	8	40	1.68
20134--23662	181	19.6	181	74	8	2242	41	9	8	40	1.68
21725--24871	181	17.7	175	71	13	722	41	9	8	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23659--29221	181	30.6	179	70	13	1994	41	9	8	40	1.69
25104--25191	42	2.1	43	86	2	124	40	10	9	39	1.71
26313--26345	15	2.3	15	89	5	50	72	0	0	27	0.85
25214--28272	540	5.7	533	74	9	1819	41	9	8	40	1.68
27554--28233	340	2.0	340	94	0	1180	39	10	8	41	1.70
28317--28387	17	4.2	17	83	16	103	38	11	5	45	1.64
28317--28387	33	2.1	34	87	12	103	38	11	5	45	1.64
28351--28699	182	1.9	179	85	2	484	41	7	8	42	1.64
28688--28725	13	2.9	13	92	0	58	39	15	7	36	1.77
29206--30670	181	8.2	180	75	7	997	42	10	7	39	1.67
29715--30668	363	2.6	359	77	6	975	43	10	7	38	1.68
30346--30994	316	2.1	316	97	0	1228	44	10	7	37	1.67
30190--31165	497	2.0	493	79	5	1067	43	10	6	38	1.65
30662--32494	181	10.4	175	71	12	592	42	10	7	39	1.68
31482--31516	16	2.1	17	89	10	54	40	5	8	45	1.58
31763--33007	178	6.9	177	74	11	789	41	11	8	39	1.71
33007--33427	181	2.3	181	82	4	499	39	9	9	41	1.70
33447--34649	180	6.7	179	76	6	925	39	9	9	41	1.70
33498--34554	361	3.0	360	78	6	845	40	8	9	41	1.69
34505--34796	147	2.0	149	84	8	391	41	9	6	42	1.63
34544--34835	147	2.0	145	78	7	304	41	10	6	41	1.65
34653--35294	179	3.6	177	80	7	660	42	8	6	41	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35962--36882	181	5.1	180	78	5	757	41	10	7	40	1.67
35961--36890	362	2.6	362	79	4	864	41	10	7	40	1.68
36851--36916	34	1.9	34	96	0	123	40	12	3	43	1.57
36863--36922	17	3.5	17	72	17	61	41	11	1	45	1.50
36675--37097	215	2.0	214	80	3	483	40	10	7	41	1.66
36889--37666	181	4.3	180	78	6	709	40	10	8	40	1.70
36399--37458	576	1.8	576	80	3	1283	41	9	7	41	1.67
36886--37666	361	2.2	362	80	6	843	40	10	8	40	1.70
38907--39386	181	2.7	177	80	6	513	43	10	5	40	1.62
38893--39355	179	2.6	178	80	7	501	44	9	6	40	1.62
39251--39554	166	1.9	161	83	4	394	44	9	7	38	1.66
39886--39918	18	1.9	17	88	11	50	39	6	6	48	1.53
39565--39951	181	2.1	181	80	4	431	41	9	6	42	1.63
39758--40308	298	1.8	298	80	4	655	42	9	7	41	1.65
40081--41265	182	6.6	173	77	8	686	42	9	9	39	1.70
40395--41728	180	7.2	180	73	10	958	41	10	8	39	1.69
40056--41298	363	3.5	357	78	7	1062	41	10	8	39	1.70
41307--41352	20	2.2	20	84	3	56	50	10	2	36	1.50
41315--41354	20	2.0	20	95	0	71	47	15	0	37	1.45
41728--42515	180	4.4	179	73	7	549	41	9	7	40	1.66
42527--48133	181	31.3	180	75	7	3936	40	9	8	40	1.69
42564--48133	358	15.5	354	74	9	3476	40	9	8	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42564--48133	538	10.4	536	76	7	3934	40	9	8	40	1.69
47174--47215	21	2.0	21	86	13	61	38	9	9	42	1.70
48036--48242	110	1.9	109	81	3	254	37	10	7	44	1.67
48148--50266	181	11.8	178	74	9	1120	42	9	8	39	1.68
48207--50243	540	3.8	533	76	9	1501	42	9	8	39	1.68
50106--50138	18	1.9	17	88	11	50	39	6	6	48	1.53
49974--50527	297	1.9	299	82	6	705	42	7	7	42	1.60
50271--52456	361	6.1	357	74	9	1400	41	9	8	40	1.69
50270--52456	181	12.1	178	73	9	1231	41	9	8	40	1.69
51763--52231	180	2.6	181	79	7	458	43	10	7	38	1.67
52385--52739	128	2.8	128	95	0	624	39	12	7	40	1.72
52590--52644	28	2.0	28	96	0	101	50	7	5	36	1.53
52766--53779	181	5.7	178	74	9	620	39	10	9	40	1.72

Tables:   1

The End!