genome.fa.s106.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167931.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_194, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53419

Tables:   1   2   

This is table  1  of  2  ( 158 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66--117	13	4.2	12	79	11	61	46	1	0	51	1.12
194--781	181	3.3	178	81	6	646	40	10	8	40	1.70
999--1064	20	3.1	21	76	10	64	43	1	4	50	1.32
1004--1064	21	2.8	22	75	12	63	42	1	4	50	1.33
1386--1437	27	2.0	26	85	11	70	46	0	1	51	1.12
1592--1662	29	2.4	29	79	15	74	47	1	1	49	1.18
1738--1800	20	3.2	20	78	13	78	49	1	0	49	1.10
1741--1838	15	7.2	14	69	23	68	47	3	2	46	1.29
1866--1916	19	2.7	19	81	9	59	45	3	1	49	1.32
1971--2000	10	3.0	10	100	0	60	60	0	0	40	0.97
1952--2004	13	4.2	13	80	4	54	54	0	0	45	0.99
2779--2844	34	1.9	35	82	14	84	50	7	1	40	1.40
2839--2882	15	2.9	15	90	6	63	47	2	2	47	1.27
3427--3469	21	2.0	21	86	8	61	46	0	2	51	1.13
3425--3480	24	2.4	24	80	11	64	42	1	1	53	1.21
3724--3830	30	3.8	27	76	20	96	52	1	0	45	1.11
3724--3804	9	9.2	9	71	22	50	51	2	0	45	1.14
3791--3850	18	3.4	17	78	17	52	51	0	1	46	1.10
3751--3835	18	4.2	20	73	18	79	52	1	0	45	1.08
3928--3976	20	2.5	19	80	9	53	46	0	4	48	1.20
4073--4111	18	2.1	18	85	4	51	48	0	0	51	1.00
4146--4199	22	2.5	22	76	11	65	50	1	1	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4207--4263	11	5.0	11	75	12	53	52	1	0	45	1.11
5058--5095	20	2.0	18	90	10	58	52	0	5	42	1.24
5020--5105	29	3.0	28	75	17	79	52	2	4	40	1.35
6928--6987	22	2.6	23	73	21	63	46	5	1	46	1.34
7411--7459	14	3.8	14	71	17	52	48	0	0	51	1.00
7661--7720	27	2.3	27	82	5	70	45	3	0	51	1.17
7863--7948	37	2.4	37	78	7	97	53	0	2	44	1.13
7877--7935	17	3.3	17	75	11	55	52	0	3	44	1.17
8303--8351	12	4.2	12	75	17	50	57	0	0	42	0.99
8304--8358	14	3.9	14	78	19	51	54	0	0	45	0.99
8313--8395	30	2.7	30	80	9	80	46	0	2	50	1.14
9103--9144	21	2.0	21	85	4	57	52	2	2	42	1.27
9343--9404	31	2.0	32	84	9	83	41	4	1	51	1.33
9410--9457	16	2.7	18	84	9	64	45	2	2	50	1.25
9410--9456	8	5.5	8	79	20	51	46	2	2	48	1.25
9364--9475	31	3.6	30	75	15	95	41	3	1	52	1.29
9693--9729	19	1.9	19	89	10	58	48	2	2	45	1.30
9921--9970	20	2.5	21	83	6	59	60	0	2	38	1.09
10153--10217	28	2.3	28	77	15	71	30	4	4	60	1.37
10425--10488	22	2.9	22	76	6	58	43	1	0	54	1.09
11510--11558	18	2.8	17	78	12	55	38	2	10	48	1.48
10641--11910	542	2.3	542	81	4	1328	41	10	8	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11960--12014	13	4.0	14	76	19	53	58	0	0	41	0.98
11978--12034	18	3.1	18	80	5	69	61	0	1	36	1.07
13135--13164	15	2.1	15	93	6	53	66	6	0	26	1.16
13228--13285	13	4.5	13	74	20	50	51	0	0	48	1.00
13243--13281	21	1.9	21	89	5	62	48	0	0	51	1.00
13581--13610	16	1.9	15	93	6	51	43	6	0	50	1.28
13706--14264	181	3.1	179	81	4	608	42	8	8	40	1.67
14389--14427	15	2.4	17	87	8	55	64	0	2	33	1.08
14562--14664	17	6.6	16	71	22	85	39	0	2	56	1.21
14602--14664	14	4.3	14	78	11	72	38	0	3	58	1.14
15183--15232	26	1.9	26	87	0	73	46	0	2	52	1.12
15156--15230	32	2.3	32	81	4	107	48	0	1	50	1.09
15466--15514	22	2.2	23	85	10	66	51	6	0	42	1.27
15574--15627	22	2.5	21	79	8	63	48	0	3	48	1.19
15899--16325	180	2.4	181	75	11	412	37	9	10	43	1.70
16597--16928	182	1.8	182	83	5	447	38	8	10	42	1.70
16736--17164	237	1.8	237	79	2	502	37	9	9	44	1.69
16989--17430	180	2.4	181	81	4	473	40	8	8	42	1.65
18475--19876	361	3.9	356	79	6	1362	39	7	10	41	1.69
18477--19876	538	2.6	536	81	4	1538	39	8	10	41	1.69
18475--19876	181	7.8	181	79	5	1329	39	7	10	41	1.69
19902--20511	182	3.4	181	78	4	534	42	9	10	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19416--20348	482	1.9	480	81	3	1099	41	9	11	37	1.74
20010--20510	180	2.8	181	79	4	526	43	9	9	37	1.70
19243--20510	662	1.9	659	82	4	1581	41	8	11	38	1.72
20528--21435	181	5.0	180	78	5	830	41	9	7	40	1.67
21720--23120	180	7.8	180	78	6	1229	39	8	10	41	1.70
21720--23120	361	3.9	356	79	5	1310	39	8	10	41	1.70
22846--23416	301	1.9	301	83	2	734	41	8	12	37	1.73
22660--23592	482	1.9	481	81	3	1108	40	9	12	37	1.75
23255--23755	181	2.8	182	80	3	535	42	9	10	37	1.71
22480--23755	663	1.9	661	81	4	1543	40	9	11	38	1.73
23773--25120	181	7.5	180	75	7	946	42	10	7	40	1.67
23774--25055	361	3.6	360	76	6	1034	42	9	7	40	1.67
24986--25276	156	1.9	155	82	5	363	39	10	6	42	1.65
25687--25719	18	1.9	17	88	11	50	39	6	6	48	1.53
25142--25821	182	3.8	177	76	8	575	40	9	8	41	1.68
27293--27356	17	3.8	16	74	24	60	32	4	3	59	1.34
27302--27373	31	2.2	34	83	11	89	33	4	2	59	1.31
27840--27892	19	2.6	21	80	17	67	52	1	0	45	1.11
28117--28172	29	1.9	29	85	0	76	46	3	0	50	1.19
28213--28275	25	2.4	27	84	7	76	49	0	3	47	1.17
28603--28683	15	5.4	15	73	21	64	45	1	2	50	1.22
28564--28638	10	7.6	10	71	16	50	50	2	0	46	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28621--28685	28	2.3	29	84	10	89	43	1	3	52	1.26
28681--28712	16	1.9	17	93	6	57	40	6	0	53	1.26
29114--29152	19	2.1	19	85	9	53	48	2	2	46	1.29
29407--29433	14	1.9	14	100	0	54	55	0	0	44	0.99
29743--29799	23	2.6	21	76	10	60	45	1	0	52	1.11
29719--29807	32	3.1	29	76	19	87	48	1	1	49	1.16
30561--30650	20	4.3	22	74	14	75	54	1	0	44	1.07
31062--31128	21	3.3	19	78	14	64	41	2	0	55	1.15
31114--31188	4	17.5	4	76	22	57	49	0	2	48	1.15
31114--31188	9	8.8	8	73	26	57	49	0	2	48	1.15
31112--31189	23	3.6	21	77	20	65	50	0	2	47	1.15
31138--31187	27	1.9	25	88	8	73	50	0	2	48	1.12
31137--31200	20	3.0	21	81	16	71	53	0	3	43	1.16
31320--31370	18	2.8	19	75	24	65	43	1	0	54	1.11
31301--31366	21	3.2	21	77	8	57	42	1	0	56	1.08
31440--31496	17	3.3	17	69	11	53	49	3	3	43	1.36
31565--31602	18	2.1	19	85	5	51	50	0	0	50	1.00
32103--32141	19	2.1	18	85	4	51	56	0	2	41	1.13
32463--32509	25	2.0	23	87	8	67	51	0	0	48	1.00
32473--32517	16	2.8	16	83	10	56	44	0	2	53	1.13
32611--32658	16	3.3	14	78	18	53	58	6	2	33	1.35
33652--33685	6	5.8	6	86	6	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33637--33687	17	2.9	17	82	5	57	50	0	0	49	1.00
33635--33692	9	6.7	9	75	11	50	48	0	0	51	1.00
33642--33685	23	2.0	23	90	4	72	52	0	0	47	1.00
33885--34174	149	1.9	149	82	4	361	43	9	6	41	1.63
34659--34730	29	2.5	29	77	8	76	52	1	1	44	1.18
35071--35103	13	2.4	14	90	10	50	51	0	6	42	1.26
35562--35599	17	2.2	17	86	9	51	42	0	2	55	1.14
36243--36641	179	2.2	179	80	4	412	43	8	8	39	1.66
36789--36830	20	2.1	20	86	8	59	54	0	0	45	0.99
36781--36891	27	3.9	30	67	15	74	47	0	0	52	1.00

Tables:   1   2