genome.fa.s106.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167931.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_194, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53419

Tables:   1   2   

This is table  2  of  2  ( 158 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36755--36844	47	1.9	47	81	0	108	50	0	1	48	1.08
36824--36888	24	2.8	24	80	15	73	43	0	0	56	0.99
37022--37083	24	2.6	24	70	14	56	46	3	1	48	1.28
37320--37356	20	1.9	18	89	10	56	56	0	0	43	0.99
37496--37576	10	8.1	10	70	23	55	49	1	2	46	1.23
37628--37684	22	2.6	22	79	17	66	56	0	3	40	1.17
38231--38290	23	2.7	21	73	21	59	46	1	5	46	1.34
38538--38584	19	2.6	18	80	6	51	48	0	0	51	1.00
39185--39246	29	2.0	33	82	14	80	48	6	3	41	1.45
39529--39592	27	2.3	28	81	5	76	56	1	0	42	1.09
39516--39581	32	2.0	34	82	11	84	56	1	0	42	1.08
40305--40343	21	1.9	20	84	5	51	41	5	2	51	1.38
40506--40546	11	3.6	12	77	9	50	41	0	0	58	0.98
40882--41694	181	4.5	181	77	5	524	41	9	8	40	1.69
41007--41692	362	1.9	358	80	4	808	41	9	8	39	1.69
41685--41744	27	2.3	27	88	2	95	46	0	11	41	1.40
41819--42519	180	3.9	175	78	8	648	40	10	7	40	1.69
42528--42858	181	1.8	178	83	4	439	42	12	8	36	1.74
43017--43066	19	2.6	20	84	6	59	54	4	0	42	1.19
43252--43296	16	2.7	16	86	6	54	42	2	2	53	1.25
43644--43681	19	2.0	19	89	0	58	57	0	0	42	0.98
44012--44060	16	3.2	16	83	13	59	46	2	2	48	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44151--44186	3	12.3	3	94	5	65	63	0	0	36	0.94
44149--44245	15	6.5	15	73	17	62	58	2	2	37	1.21
47670--48450	359	2.2	359	79	5	835	39	7	9	43	1.66
47566--48546	179	5.5	181	76	5	790	40	8	10	41	1.69
48766--48883	13	9.2	13	68	18	61	48	2	3	45	1.32
48812--48895	39	2.2	38	83	12	100	47	1	2	48	1.22
48982--49031	22	2.3	22	82	6	57	50	2	4	44	1.32
49002--49045	18	2.6	17	82	13	56	52	0	2	45	1.13
48999--49053	22	2.5	21	85	5	65	49	0	1	49	1.11
49790--49824	17	2.1	16	89	5	52	57	0	0	42	0.99
50842--51245	181	2.2	182	85	3	555	44	8	8	38	1.66
50842--51297	181	2.5	181	83	4	519	43	9	8	38	1.68
51289--51331	23	2.0	23	86	9	63	34	9	6	48	1.62
52115--52172	25	2.3	26	85	5	68	53	1	0	44	1.10
52092--52262	91	1.9	89	80	11	195	51	1	2	45	1.21
52332--52366	16	2.2	16	89	0	52	42	0	2	54	1.15

Tables:   1   2

The End!