genome.fa.s11.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167836.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_108, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82779

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38--1689	175	9.3	176	72	12	975	42	9	8	40	1.66
2276--3612	178	7.5	179	72	10	612	43	8	8	39	1.67
2714--2743	14	2.1	14	93	0	51	76	0	0	23	0.78
2262--3468	357	3.4	362	74	9	907	42	8	9	39	1.68
2238--4679	179	13.8	176	70	14	854	42	9	8	40	1.67
3647--3683	18	2.2	18	90	9	60	37	13	2	45	1.58
4109--4432	160	2.0	161	82	6	397	42	8	7	41	1.63
6836--10684	181	21.5	182	75	7	2463	41	10	8	39	1.69
6862--10667	357	10.6	359	75	8	2298	41	10	8	39	1.69
6867--10678	540	7.1	529	77	7	2520	41	10	8	39	1.69
10568--10802	118	2.0	118	80	3	267	42	9	7	40	1.65
10685--13349	181	14.8	178	76	8	1233	42	9	8	39	1.68
10688--13418	361	7.6	359	75	8	1930	42	9	8	39	1.68
10688--13418	542	5.0	541	75	8	2190	42	9	8	39	1.68
16479--16529	19	2.7	19	96	0	93	35	17	11	35	1.87
21112--26616	181	30.4	180	71	13	2521	41	9	8	40	1.68
23539--23571	17	1.9	17	100	0	66	36	12	9	42	1.74
24159--24194	16	2.2	17	90	5	56	41	11	0	47	1.39
24147--24194	17	2.8	17	81	12	62	43	10	0	45	1.38
24269--26615	176	13.3	175	76	11	1688	41	9	7	40	1.67
24387--31587	714	10.2	706	70	13	2089	42	9	7	40	1.67
24284--26632	539	4.4	522	76	12	1727	41	9	7	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26627--31849	181	29.2	181	75	8	3663	41	10	8	39	1.68
30816--31599	182	4.4	181	76	8	647	41	9	8	40	1.68
31868--37956	360	17.1	355	73	11	2834	41	9	8	40	1.68
31868--37953	181	34.1	180	72	10	3027	41	9	8	40	1.68
38022--38076	20	2.7	20	78	10	58	18	3	5	72	1.18
39094--42967	181	21.7	178	75	9	2321	41	10	8	39	1.70
39191--42836	533	6.8	529	77	9	2311	41	10	8	39	1.70
39094--42967	358	10.8	359	73	10	1623	41	10	8	39	1.70
39480--42750	720	4.6	717	76	9	1966	41	10	8	39	1.70
39191--42961	535	7.0	532	77	7	2650	41	10	8	39	1.70
42983--44519	181	8.5	177	74	9	933	42	9	8	40	1.68
42980--44519	361	4.3	356	77	7	1281	42	9	8	40	1.68
43261--44519	542	2.3	538	80	3	1345	41	9	8	40	1.68
44489--46930	181	13.5	180	76	5	1946	39	8	9	42	1.68
44489--46930	361	6.8	358	76	6	1938	39	8	9	42	1.68
47057--50748	539	6.9	524	76	10	2055	39	8	10	41	1.69
46985--50748	361	10.5	362	75	7	2618	39	8	10	41	1.69
46985--50717	898	4.2	893	75	8	2726	39	8	10	41	1.69
46985--50717	181	20.8	181	74	6	2605	39	8	10	41	1.69
52271--62590	181	56.8	181	69	12	3396	39	8	9	42	1.67
52741--56510	365	10.4	358	73	11	1315	39	8	9	42	1.68
53813--53850	18	2.2	17	86	9	51	47	2	7	42	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54349--54381	18	1.9	17	88	11	50	48	6	6	39	1.53
52345--62590	361	28.2	362	70	12	3353	39	8	9	42	1.68
56734--57015	152	1.9	150	82	5	354	42	5	8	43	1.57
57886--57921	16	2.1	17	90	10	56	44	8	5	41	1.58
58427--58459	18	1.9	17	88	11	50	48	6	6	39	1.53
57179--62587	542	10.1	538	75	9	1958	39	7	10	42	1.67
59347--62588	180	18.0	180	75	8	1910	39	7	10	42	1.67
62615--65437	181	15.7	181	76	6	2125	40	8	10	40	1.69
62644--65436	361	7.8	361	76	6	2161	40	8	10	40	1.69
62615--65437	542	5.2	537	76	7	2336	40	8	10	40	1.69
65469--69975	539	8.4	537	77	7	3520	41	10	8	39	1.69
65469--69975	180	25.2	180	76	6	3466	41	10	8	39	1.69
70497--75697	181	29.0	180	75	7	3570	41	9	8	39	1.68
69982--78265	720	11.6	719	74	10	4930	41	9	8	40	1.68
69982--75690	541	10.6	535	75	8	3660	42	9	8	39	1.68
73305--73342	20	1.9	20	88	0	58	60	2	0	36	1.11
75689--75723	17	2.1	17	89	5	54	40	11	0	48	1.39
75543--75842	150	2.0	150	84	1	395	41	8	7	42	1.63
75701--76819	180	6.2	178	76	7	768	41	9	8	41	1.66
75711--78330	357	7.4	355	75	11	1027	41	9	8	40	1.67
75686--78266	537	4.8	530	75	10	1909	41	9	8	41	1.67
75691--78266	181	14.5	181	74	9	1674	41	9	8	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76646--76979	160	2.1	161	80	7	360	41	8	8	41	1.66
79925--82292	181	13.2	181	76	7	1789	41	10	8	40	1.69
80480--82243	177	9.8	178	75	9	928	41	10	8	40	1.68
79933--82765	357	7.8	352	74	11	1381	41	10	7	40	1.69
81360--81415	18	3.1	20	73	23	61	41	14	5	39	1.68
79934--82779	539	5.3	530	77	9	1841	41	10	7	40	1.69
82275--82310	18	2.0	18	100	0	72	38	16	5	38	1.72
82296--82712	181	2.3	181	79	7	445	40	11	7	41	1.68

Tables:   1

The End!