genome.fa.s111.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167936.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_199, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52286

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1197--1249	26	2.0	26	96	0	97	24	16	28	30	1.97
1222--1738	159	3.3	159	75	5	483	24	29	26	19	1.98
2373--2794	159	2.6	156	78	8	386	24	29	27	18	1.98
6398--6457	23	2.6	24	92	7	99	20	25	23	31	1.98
7861--8385	159	3.3	158	76	4	500	22	28	27	22	1.99
8360--8411	26	2.0	26	92	3	88	23	15	28	32	1.95
8568--9081	158	3.2	158	81	6	478	23	29	27	19	1.98
9058--9107	26	1.9	26	88	8	75	30	18	26	26	1.98
9777--9829	26	2.0	26	92	7	90	28	20	24	26	1.99
9802--10232	159	2.7	157	81	5	510	23	30	28	17	1.97
9803--10297	159	3.1	158	78	6	500	23	29	27	19	1.98
10279--10334	26	2.2	26	93	0	94	26	16	25	32	1.96
11260--11822	159	3.6	157	76	7	532	24	31	27	17	1.97
12417--12470	26	2.1	26	93	6	92	29	16	24	29	1.97
12664--13018	159	2.2	159	80	4	378	25	31	25	17	1.97
13130--13182	26	2.0	26	92	7	90	30	20	22	26	1.98
13846--13899	26	2.1	26	89	6	83	29	14	24	31	1.95
14190--14242	26	2.0	26	89	7	81	26	18	26	28	1.98
15226--15278	26	2.0	26	85	7	72	33	18	22	24	1.97
15568--15620	26	2.0	26	88	0	79	28	20	22	28	1.99
15763--15815	26	2.0	26	86	13	74	30	16	22	30	1.96
15867--16283	159	2.6	159	77	6	389	21	32	27	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16263--16315	26	2.0	26	96	0	97	24	20	28	26	1.99
16358--16897	159	3.4	156	80	4	575	21	33	27	17	1.96
16358--16825	159	3.0	157	82	2	580	22	33	27	16	1.95
16871--16923	26	2.0	26	92	0	88	26	20	26	26	1.99
17936--17988	26	2.0	26	89	7	81	32	18	22	26	1.97
19001--19053	26	2.0	26	92	7	90	22	22	28	26	1.99
20404--20820	157	2.6	160	77	4	414	23	30	28	17	1.97
21419--21471	26	2.0	26	92	0	88	28	18	22	30	1.98
21774--21825	26	2.0	26	88	7	79	30	15	23	30	1.95
21616--21984	184	2.0	183	82	3	447	23	27	27	21	1.99
21799--22264	159	2.9	158	75	7	433	23	30	27	18	1.98
21800--22294	158	3.1	158	75	8	486	23	30	26	19	1.98
22996--23048	26	2.0	26	92	0	88	28	18	22	30	1.98
23193--23562	184	2.0	184	82	5	453	23	26	27	21	1.99
23377--23877	159	3.2	156	79	5	465	23	29	26	20	1.99
30366--30418	26	2.0	26	88	0	79	24	20	26	28	1.99
31085--31135	26	2.0	26	88	7	77	29	17	23	29	1.97
31113--31523	158	2.6	159	79	3	445	22	29	30	17	1.96
32744--32796	26	2.0	26	92	0	88	24	18	28	28	1.98
34658--34709	26	2.0	25	88	3	77	25	17	28	28	1.97
35800--36184	158	2.4	158	80	6	433	22	31	27	17	1.97
36951--37003	26	2.0	26	92	7	90	24	20	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37457--37512	26	2.2	26	90	0	85	26	17	26	28	1.98
38180--38230	26	2.0	26	92	7	86	31	15	25	27	1.96
38522--38574	26	2.0	26	92	0	88	26	20	26	26	1.99
39218--39270	26	2.0	26	89	7	81	26	18	26	28	1.98
39951--40003	26	2.0	26	89	7	81	30	20	22	26	1.98
40294--40346	26	2.0	26	88	0	79	24	16	28	30	1.97
40297--40353	26	2.2	26	83	3	69	28	17	28	26	1.98
40135--40504	184	2.0	184	81	7	430	22	28	28	20	1.99
40320--40826	158	3.2	156	77	6	502	22	28	28	20	1.98
40794--40846	26	2.0	26	96	0	97	24	20	28	26	1.99
40888--41319	170	2.5	169	85	2	560	19	30	30	20	1.97
41331--41383	26	2.0	26	89	7	81	26	20	26	26	1.99
41831--41883	26	2.0	26	88	0	79	24	18	30	26	1.98
42040--42092	26	2.0	26	89	7	81	28	18	24	28	1.98
42225--42277	26	2.0	26	88	0	79	26	16	28	28	1.97
41674--42426	394	1.9	393	81	3	924	22	28	27	20	1.99
42604--42656	26	2.0	26	89	7	81	32	20	20	26	1.98
42802--42864	32	2.0	32	87	0	90	34	33	15	15	1.90
43161--43448	159	1.8	158	84	3	391	23	29	28	18	1.98
43864--43916	26	2.0	26	92	7	90	28	20	24	26	1.99
43890--44539	157	4.1	158	79	3	657	22	29	27	20	1.99
45242--45294	26	2.0	26	89	7	81	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45585--45637	26	2.0	26	96	0	97	24	16	28	30	1.97
46293--46345	26	2.0	26	88	0	79	28	20	26	24	1.99
46525--46900	169	2.3	157	82	7	423	22	29	27	20	1.98
46653--47179	158	3.3	158	78	5	535	22	31	27	19	1.98
47883--47935	26	2.0	26	85	7	72	26	20	24	28	1.99
49437--49477	11	3.6	11	87	6	55	21	0	2	75	0.92
49437--49477	4	10.8	4	79	10	50	21	0	2	75	0.92
49541--49592	5	10.6	5	76	19	56	17	3	1	76	1.02
49513--49593	30	2.7	30	81	10	87	14	7	3	74	1.18
49509--49592	13	5.9	13	74	14	53	15	5	3	75	1.14
49649--49838	58	3.2	58	89	6	265	42	9	12	35	1.75

Tables:   1

The End!