genome.fa.s114.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167939.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_200, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52130

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174--2285	357	5.9	353	76	8	1583	42	10	8	39	1.69
172--2279	181	11.8	178	75	7	1190	42	10	8	38	1.69
291--2288	535	3.7	528	77	8	1729	41	10	7	39	1.69
3692--9410	181	31.8	181	78	6	4785	39	8	9	41	1.70
9353--9471	61	2.0	61	84	0	157	47	6	13	32	1.69
9175--9651	241	2.0	241	81	1	571	40	9	10	39	1.71
9972--11906	181	10.8	181	78	5	1641	40	9	9	40	1.70
10166--11754	720	2.2	715	80	4	1712	40	10	9	40	1.71
12597--12631	18	1.9	18	88	0	52	25	8	17	48	1.75
12505--13191	200	3.4	197	78	5	673	34	12	11	40	1.80
13750--16404	179	14.9	178	73	10	1072	39	7	10	42	1.67
14645--15516	176	4.9	178	76	7	510	40	6	9	43	1.63
14573--16338	536	3.3	541	78	7	1456	39	7	10	42	1.67
13597--16561	180	16.6	179	74	9	1826	39	7	10	42	1.68
16996--17243	138	1.8	136	80	9	297	41	9	9	39	1.69
17139--18510	180	7.6	179	76	9	1019	41	8	8	40	1.68
17335--18514	361	3.3	363	80	6	1090	41	8	8	40	1.67
18326--18359	17	1.9	18	88	5	52	50	0	8	41	1.34
19432--19474	22	2.0	22	81	9	52	39	4	2	53	1.34
18525--20321	181	10.0	181	72	12	901	40	7	9	42	1.67
19606--19909	166	1.8	167	83	7	404	39	6	10	43	1.64
19418--20052	346	1.8	347	79	8	745	39	7	10	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20425--23739	179	18.7	181	75	9	2362	40	7	9	42	1.67
21073--21368	161	1.8	163	84	5	413	39	7	9	43	1.65
21578--23526	182	11.0	169	71	14	847	40	7	9	42	1.66
20620--25577	535	9.4	532	72	12	1620	40	8	9	41	1.68
23741--24450	180	4.0	178	75	8	607	40	9	8	40	1.69
24479--25622	171	6.5	180	73	9	746	39	8	10	41	1.70
27356--28640	534	2.4	531	79	7	1335	42	11	7	38	1.70
26758--28853	177	12.0	178	75	10	904	42	10	7	39	1.68
28363--28845	182	2.7	177	79	5	452	44	10	6	38	1.65
30266--35998	181	31.8	181	76	7	4280	40	8	9	41	1.69
30276--35998	720	7.9	716	75	9	3672	40	8	9	41	1.69
30295--35998	901	6.3	895	76	8	4224	40	8	9	41	1.69
36570--37230	181	3.6	180	74	6	555	41	9	8	39	1.69
37404--38281	355	2.5	357	79	7	891	40	10	9	39	1.71
37231--38448	181	6.8	178	77	7	931	41	8	9	40	1.69
39127--39161	18	1.9	18	88	0	52	25	8	17	48	1.75
39069--39745	199	3.4	195	77	8	642	35	12	12	40	1.80
41124--41156	17	2.0	17	88	5	50	48	0	12	39	1.40
39932--42961	536	5.7	534	75	9	1970	39	7	10	42	1.68
39932--43105	181	17.8	180	74	7	1971	39	7	10	42	1.68
41188--42812	354	4.5	352	74	10	937	39	7	9	43	1.66
39931--43105	356	8.9	354	73	9	1956	39	7	10	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43106--43178	15	4.9	15	69	24	64	52	1	15	31	1.51
43541--43788	138	1.8	136	80	7	304	41	8	9	40	1.68
43684--45060	181	7.6	181	78	6	1190	41	8	8	40	1.67
43816--45060	362	3.4	360	81	4	1357	41	8	8	41	1.67
44871--44904	17	1.9	18	88	5	52	50	0	8	41	1.34
45071--46795	180	9.8	181	72	12	883	40	7	9	42	1.66
46472--46795	179	1.8	179	80	9	401	40	8	8	42	1.66
45800--46756	526	1.8	528	80	5	1157	40	7	9	42	1.66
46901--47703	179	4.5	179	74	11	612	39	9	9	41	1.69
46951--47715	362	2.1	358	80	7	845	40	8	9	42	1.68
48946--49274	178	1.8	177	83	5	439	41	8	9	40	1.68
48593--50047	538	2.7	537	77	9	1162	39	8	10	41	1.69
48024--50241	179	12.5	180	74	10	1366	40	7	9	42	1.67
49922--50564	336	1.9	334	79	5	724	41	9	8	41	1.67
50243--50955	180	4.0	180	74	9	592	40	9	8	40	1.69
50984--52128	171	6.5	180	73	9	746	39	8	10	41	1.70

Tables:   1

The End!