genome.fa.s120.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167945.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_206, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51494

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1217--1269	26	2.0	26	88	0	79	30	28	16	24	1.97
1--1924	894	2.2	878	86	4	2641	25	25	24	24	2.00
1715--2143	219	2.0	219	91	0	696	32	24	19	23	1.97
2338--2390	26	2.0	26	89	7	81	24	22	22	30	1.99
3724--3781	26	2.2	26	87	0	80	46	20	12	20	1.82
4159--4210	25	2.0	26	92	3	88	26	26	17	28	1.97
1934--6655	903	5.2	901	86	3	6380	25	24	24	25	2.00
5966--6016	26	2.0	26	92	0	84	31	27	13	27	1.94
6690--9926	906	3.7	883	85	4	4269	26	24	23	25	2.00
9215--9267	26	2.0	26	96	0	97	26	24	20	28	1.99
10743--10795	26	2.0	26	96	0	97	26	28	20	24	1.99
12493--12543	26	2.0	26	92	0	84	27	21	21	29	1.99
13381--13431	26	2.0	26	96	0	93	27	23	19	29	1.98
9946--15948	893	6.7	890	85	5	7261	25	24	24	25	2.00
11629--15975	892	4.9	890	85	4	5615	25	24	24	25	2.00
15205--18080	714	4.1	716	86	4	3958	26	23	23	26	2.00
19215--19267	26	2.0	26	88	0	79	26	28	15	30	1.96
20116--20166	26	2.0	26	88	0	75	21	25	21	31	1.98
18343--21774	896	3.8	892	85	5	4526	25	24	23	25	2.00
21693--21880	103	1.8	103	86	2	261	16	31	23	27	1.96
22004--22056	26	2.0	26	96	0	97	28	26	18	26	1.98
23524--23711	103	1.8	103	86	2	261	16	31	23	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23835--23887	26	2.0	26	96	0	97	28	26	18	26	1.98
25558--25611	26	2.0	27	89	3	83	29	25	16	27	1.97
27280--27350	26	2.7	26	97	0	133	26	23	18	30	1.97
28193--28245	26	2.0	26	96	0	97	24	26	20	28	1.99
29790--29842	26	2.0	26	96	0	97	28	26	18	26	1.98
29010--31583	895	2.9	867	87	5	3490	25	24	23	25	2.00
31551--31603	26	2.0	26	96	0	97	26	24	20	28	1.99
31787--31813	12	2.2	12	100	0	54	14	22	18	44	1.86
32333--32385	26	2.0	26	85	0	70	30	22	16	30	1.96
31029--32587	782	2.0	782	86	1	2151	24	24	25	25	2.00
32359--35277	744	4.1	703	82	9	3397	27	24	22	26	2.00
35367--35419	26	2.0	26	96	0	97	28	26	18	26	1.98
36266--36318	26	2.0	26	92	0	88	28	28	20	22	1.99
37152--37204	26	2.0	26	92	0	88	30	24	18	26	1.98
34450--45307	889	12.1	886	76	9	8894	25	24	24	25	2.00
38909--38961	26	2.0	26	96	0	97	26	24	20	28	1.99
40697--40749	26	2.0	26	92	0	88	26	22	20	30	1.98
38050--45307	888	8.0	900	73	10	5017	25	24	24	25	2.00
41432--41487	26	2.2	26	96	0	103	30	21	17	30	1.96
41870--41920	26	2.0	26	92	0	84	29	23	15	31	1.95
43490--43542	26	2.0	26	96	0	97	28	26	18	26	1.98
44375--44432	26	2.2	26	93	3	98	27	27	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45733--45783	26	2.0	26	92	7	86	29	27	15	27	1.96
46625--46677	26	2.0	26	92	0	88	26	22	22	28	1.99
47510--47562	26	2.0	26	96	0	97	26	24	20	28	1.99
45538--50118	893	5.1	885	82	8	5074	26	24	23	25	2.00
48381--48433	26	2.0	26	100	0	106	26	26	20	26	1.99
50952--51004	26	2.0	26	100	0	106	26	26	20	26	1.99

Tables:   1

The End!