genome.fa.s131.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167956.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_216, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50149

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113--3677	181	19.8	181	74	10	2112	40	9	8	40	1.69
4224--9016	181	26.5	181	74	7	3033	40	8	9	41	1.68
5068--5144	38	2.0	38	97	0	145	32	14	7	45	1.73
4911--5323	217	1.9	219	80	5	487	37	9	10	42	1.72
5124--9016	360	10.8	357	76	7	2907	40	8	9	41	1.68
5124--9022	541	7.2	535	77	7	3086	40	8	9	41	1.68
9033--9068	18	1.9	19	88	5	56	41	8	8	41	1.65
9239--9292	27	2.0	27	88	0	81	37	9	7	46	1.64
9456--10464	181	5.6	179	73	8	509	41	8	9	40	1.68
10553--12191	181	9.2	179	75	8	1183	42	9	7	40	1.67
10836--13334	526	4.8	525	74	11	1536	41	10	8	39	1.69
10687--12191	353	4.2	347	75	9	1124	41	9	7	40	1.67
12188--16444	358	11.9	352	70	12	1499	41	10	8	39	1.69
12188--13385	181	6.7	179	78	4	1059	41	10	8	39	1.70
13400--16687	181	18.3	181	77	6	2498	41	10	8	40	1.69
13405--16687	540	6.1	534	77	7	2428	41	10	8	40	1.69
17232--17263	16	2.0	17	88	11	50	6	15	18	59	1.57
19005--19393	176	2.2	180	79	8	429	40	6	10	42	1.65
19442--22353	181	16.3	178	74	9	1600	39	8	10	41	1.69
21303--21341	20	2.1	19	85	9	53	38	2	2	56	1.27
19620--22356	898	3.1	891	77	8	2291	39	8	10	42	1.69
18567--27043	358	23.6	356	68	12	2794	39	8	10	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22214--22255	19	2.3	18	84	12	50	26	0	4	69	1.08
23412--27037	181	20.2	178	73	9	1872	39	8	10	41	1.69
25984--26022	20	2.1	19	85	9	53	38	2	2	56	1.27
26895--26936	19	2.3	18	84	12	50	26	0	4	69	1.08
24031--36851	897	14.2	883	67	15	2844	39	8	10	41	1.70
28394--28779	177	2.2	178	81	6	442	40	6	9	42	1.65
28495--31583	358	8.6	353	73	9	1787	39	8	10	42	1.69
28394--31578	181	17.8	180	75	8	1935	39	8	10	42	1.69
28506--30857	720	3.3	710	76	8	1582	39	8	10	42	1.69
28393--31578	540	5.9	529	73	10	1734	39	8	10	42	1.69
30523--30561	20	2.1	19	85	9	53	38	2	2	56	1.27
31888--33546	358	4.6	355	76	7	999	40	8	9	41	1.68
31730--36852	181	28.2	181	69	12	1537	40	8	9	41	1.69
33941--36852	181	16.3	179	76	7	2155	39	8	9	41	1.69
36119--37717	855	1.9	863	81	5	1991	39	8	10	41	1.69
36881--37967	181	6.1	178	75	8	742	38	9	9	41	1.71
36941--37887	363	2.6	360	77	7	951	38	8	9	42	1.70
37973--38358	178	2.1	178	79	4	400	41	8	9	40	1.68
38523--40425	181	10.6	181	78	6	1621	41	9	8	40	1.68
38524--40449	356	5.4	355	75	9	1418	41	9	8	40	1.69
41144--41178	18	1.9	18	88	0	52	25	8	17	48	1.75
41087--41766	200	3.4	198	76	7	615	35	12	11	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41961--47140	181	28.8	181	75	8	3573	39	8	10	41	1.68
42289--47997	541	10.6	538	74	11	2361	39	8	10	41	1.69
41961--48001	362	16.9	360	74	9	3270	39	8	10	41	1.69
46982--47661	164	4.0	167	74	9	509	39	8	10	41	1.69
48033--50123	180	11.8	178	76	8	1491	41	7	9	41	1.66
49218--49251	17	1.9	18	88	5	52	47	5	14	32	1.69
49732--50040	172	1.8	170	81	5	392	39	5	9	44	1.61

Tables:   1

The End!