genome.fa.s139.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167964.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_223, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47478

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67--2414	181	13.2	179	75	7	1451	42	9	8	39	1.68
82--4355	360	12.0	356	72	11	1283	42	9	8	39	1.68
1894--1957	35	1.9	34	81	9	78	34	9	4	51	1.55
2472--4394	180	10.8	179	74	8	1211	42	10	8	39	1.68
2764--8461	360	16.0	356	71	12	977	41	9	8	40	1.68
4382--10276	180	32.8	179	74	8	3418	41	9	8	40	1.68
4384--10276	181	32.8	179	73	9	2707	41	9	8	40	1.68
4382--10250	543	10.9	540	74	8	3252	41	9	8	40	1.68
4415--15279	539	20.3	538	72	11	4460	41	9	8	40	1.68
9208--9530	168	1.9	168	81	6	386	42	10	7	39	1.67
9448--9924	179	2.6	179	76	9	477	42	11	8	37	1.71
10270--15278	181	28.0	180	69	12	1135	41	9	8	40	1.68
11121--11156	18	1.9	19	88	5	56	41	5	5	47	1.50
11821--15279	358	9.5	358	74	9	1441	41	9	8	40	1.68
11821--15279	181	19.1	177	70	11	1171	41	9	8	40	1.68
12958--13373	214	2.0	212	87	1	609	43	9	8	38	1.68
13448--13488	18	2.4	17	88	8	57	46	7	2	43	1.44
13166--15320	897	2.4	885	78	8	2094	41	9	7	40	1.67
15572--15897	179	1.8	180	83	2	440	42	11	6	40	1.66
15429--18149	181	15.1	178	73	7	1328	41	10	8	39	1.69
16007--17310	538	2.4	533	79	7	1350	42	10	8	38	1.70
17216--17258	20	2.1	22	87	12	65	39	6	9	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16018--18017	538	3.7	530	76	8	1309	42	10	8	39	1.69
18233--18763	181	2.9	181	78	7	415	42	10	7	39	1.68
18326--18819	181	2.7	179	75	9	473	44	10	6	38	1.65
18913--19434	177	3.0	176	78	7	411	41	10	8	40	1.68
18851--20532	181	9.3	176	73	9	490	42	10	7	39	1.66
19587--20523	181	5.2	178	76	7	706	42	9	6	41	1.64
30652--30949	164	1.8	164	81	2	375	41	11	9	37	1.74
30823--31794	177	5.5	177	75	8	845	41	10	8	39	1.70
30481--31794	531	2.5	513	80	7	1331	41	10	8	39	1.70
31693--31896	102	2.0	102	100	0	408	40	12	6	40	1.70
32003--32038	16	2.1	17	90	10	56	38	11	5	44	1.63
31816--32434	181	3.4	179	80	5	608	41	10	8	39	1.70
32313--32547	127	1.8	128	81	5	296	40	8	10	40	1.70
32442--33019	180	3.2	181	81	3	632	41	8	8	41	1.66
33464--33840	181	2.1	180	79	6	401	43	8	8	40	1.65
34184--34224	18	2.4	17	84	15	50	39	12	4	43	1.63
34181--34399	119	1.8	119	80	9	259	34	13	7	44	1.72
34300--39658	181	29.9	179	73	8	3185	41	10	8	39	1.69
34289--40977	362	18.7	357	72	10	3213	41	10	8	39	1.70
38022--38070	19	2.6	19	93	0	80	55	2	12	30	1.48
38928--39477	175	3.1	175	77	7	439	43	10	7	38	1.66
39692--40973	178	7.2	175	74	11	642	40	10	9	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41085--41496	181	2.3	180	79	7	435	39	10	8	41	1.69
41924--41996	36	2.0	36	94	0	128	49	5	8	36	1.56
41998--42907	181	5.1	177	77	10	841	40	10	8	40	1.70
42541--42590	16	2.8	18	69	25	52	36	10	10	44	1.72
42750--43048	145	2.1	145	84	2	386	41	11	10	36	1.75
41178--42883	935	1.8	930	79	9	1977	40	9	8	40	1.69
42894--44378	181	8.2	181	76	6	1128	42	9	8	39	1.67
42909--44398	542	2.7	536	81	5	1538	42	9	8	40	1.68
43491--44284	361	2.2	364	80	3	852	45	7	7	39	1.62
44159--44625	241	1.9	243	79	9	511	38	10	9	41	1.71
44409--47327	180	16.5	180	76	8	2067	42	9	8	39	1.68
44409--47327	354	8.3	354	72	10	1221	42	9	8	39	1.68
44519--47010	877	2.8	876	79	6	2160	42	9	8	39	1.68
45442--47323	181	10.6	181	73	10	694	42	9	8	39	1.69

Tables:   1

The End!