genome.fa.s14.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167839.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_110, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82127

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5654--9827	181	23.3	180	76	7	3105	40	8	9	41	1.68
6725--6771	23	2.0	23	84	8	60	36	2	2	59	1.21
8363--8693	164	2.0	165	81	4	382	39	7	9	43	1.65
8528--9837	177	7.4	174	73	9	683	40	7	9	41	1.66
9698--9960	132	2.0	133	88	5	392	39	7	9	44	1.65
9521--10110	308	1.9	306	80	6	686	40	7	9	42	1.66
9829--11489	181	9.2	179	73	10	1029	40	8	9	40	1.69
9901--10857	364	2.6	364	80	5	1027	40	8	9	41	1.69
11545--13497	180	10.9	181	77	8	1631	41	7	9	41	1.67
11547--19422	361	21.5	359	69	13	2376	40	8	9	41	1.68
13459--13531	34	2.1	35	92	2	121	34	8	2	54	1.44
14512--19432	181	27.2	180	72	10	2101	40	8	10	41	1.69
15734--16123	216	1.8	216	79	6	459	40	8	10	40	1.71
15913--19432	181	19.6	181	76	7	2497	40	8	9	41	1.69
19399--19462	30	2.1	30	97	0	119	37	3	12	46	1.57
19636--19858	120	1.9	119	87	2	331	46	8	13	32	1.73
19993--20387	180	2.2	180	80	5	440	43	9	9	37	1.71
20650--24513	181	21.6	180	75	8	2472	41	9	8	40	1.68
22298--22344	18	2.7	18	83	12	62	42	10	4	42	1.59
20650--41101	891	22.8	885	69	15	4592	41	9	8	40	1.68
24720--24752	18	1.9	17	88	11	50	39	6	6	48	1.53
24559--25040	180	2.7	180	80	7	476	42	9	7	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25374--27170	180	10.0	181	77	6	1385	41	8	8	41	1.67
25324--27261	361	5.4	355	76	8	1185	41	9	8	41	1.67
27621--30531	182	16.4	179	70	12	484	42	9	8	40	1.67
28183--28478	158	1.9	158	79	4	339	43	9	8	38	1.68
28372--30796	182	13.6	176	73	10	864	42	9	7	40	1.66
28337--31667	180	18.8	178	72	11	1499	42	9	7	40	1.66
28956--29935	529	1.9	522	79	8	1103	43	10	8	38	1.69
29519--30798	532	2.4	521	77	9	1232	42	9	7	40	1.64
30879--31680	363	2.2	360	81	5	899	42	9	7	40	1.66
31540--31811	141	1.9	145	81	5	329	43	8	7	40	1.63
31700--32700	180	5.6	178	74	12	551	42	9	7	39	1.67
30907--32551	863	1.9	851	79	8	1825	42	9	7	40	1.66
31853--32330	182	2.6	178	78	9	457	42	10	6	40	1.65
32642--32831	102	1.9	101	82	7	242	48	8	6	36	1.59
32453--32982	282	1.9	282	82	4	676	46	9	6	37	1.63
32739--34932	181	12.2	179	77	7	1681	42	9	7	40	1.65
32738--34932	543	4.1	538	79	7	1996	42	9	7	40	1.65
34826--35082	140	1.8	138	81	4	318	42	8	7	41	1.64
35044--35082	18	2.1	18	85	4	51	58	0	5	35	1.20
34965--41140	181	34.7	180	75	8	4244	41	10	8	39	1.69
35307--35970	164	3.9	165	76	8	536	41	10	8	39	1.70
36417--41140	361	13.2	360	76	6	3654	42	10	7	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41373--42105	200	3.7	197	80	5	760	41	11	12	34	1.80
42339--42368	15	2.0	15	93	0	51	16	0	40	43	1.48
42674--44610	181	10.8	181	78	4	1620	40	8	9	40	1.69
44803--45149	180	1.9	182	85	3	477	42	10	8	38	1.69
45088--45209	61	2.0	61	83	3	156	31	14	8	45	1.74
44916--45360	241	1.8	241	82	0	577	40	10	8	39	1.71
45157--51204	181	33.7	180	76	7	4680	41	10	8	39	1.70
50169--50217	17	2.8	18	67	20	50	36	8	12	42	1.72
51343--53500	182	11.7	180	70	11	975	42	10	8	39	1.69
51639--52066	177	2.4	177	79	8	425	41	10	8	39	1.69
52542--52655	56	2.0	56	100	0	228	57	7	5	29	1.47
52862--53505	179	3.6	182	75	10	586	42	9	8	39	1.66
53360--53631	133	2.1	133	84	3	354	42	10	8	38	1.70
53491--54988	181	8.4	175	74	9	903	41	10	8	40	1.68
53693--54832	534	2.1	530	79	8	1143	41	10	7	40	1.67
56869--60149	181	18.3	179	76	7	2033	39	8	10	41	1.69
56878--60149	540	6.1	538	78	6	2503	39	8	10	41	1.69
59117--60149	364	2.8	359	78	5	976	41	8	8	41	1.66
60024--60284	140	1.9	140	80	0	306	45	6	9	37	1.63
60165--61360	181	6.7	177	75	7	838	39	8	10	41	1.70
60164--61360	358	3.4	357	77	6	1005	39	8	10	41	1.70
61358--62518	179	6.5	177	75	8	468	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61357--62649	534	2.4	531	79	7	1271	40	8	9	42	1.67
61358--63254	181	10.6	180	76	7	1299	40	8	9	42	1.66
61357--63437	362	5.8	359	77	7	1633	40	8	9	41	1.67
63102--63405	165	1.8	165	80	4	371	40	6	8	44	1.62
63411--63464	27	2.0	27	88	0	81	46	7	9	37	1.64
63687--68580	360	13.7	359	76	7	3506	41	9	8	40	1.69
63681--68580	181	27.4	181	76	6	3629	41	9	8	40	1.69
63687--68550	540	9.1	535	76	8	3221	41	9	8	40	1.69
66159--66191	18	1.9	17	88	11	50	39	6	6	48	1.53
66957--67280	166	2.0	166	83	1	407	39	10	10	39	1.74
68510--68646	67	2.0	67	87	0	193	38	10	8	41	1.71
68577--69246	177	3.7	177	76	11	546	42	9	6	41	1.62
69828--70045	119	1.8	119	87	5	325	36	12	7	43	1.71
69828--70048	58	3.7	59	87	4	302	37	12	7	42	1.72
70060--70102	12	3.8	12	84	9	54	76	0	6	16	0.99
70061--70119	5	11.0	5	87	10	66	77	0	5	16	0.93
70139--70172	17	2.0	17	88	11	52	64	2	0	32	1.08
71021--71111	11	8.5	11	78	14	77	67	0	4	28	1.10
71016--71052	18	2.1	17	90	5	56	78	0	0	21	0.75
71027--71110	3	27.7	3	73	20	68	65	0	4	29	1.13
71027--71110	20	4.2	20	77	19	88	65	0	4	29	1.13
71026--71148	55	2.3	55	83	12	148	61	1	5	30	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71293--77334	181	33.9	180	74	8	3760	40	8	9	41	1.68
71588--73514	180	10.8	178	73	11	636	41	8	9	41	1.67
74966--75270	169	1.8	169	82	2	398	40	8	8	41	1.67
76001--77379	542	2.5	538	81	6	1475	41	8	9	41	1.67
76906--77330	180	2.4	178	79	6	430	43	8	7	40	1.63
73021--82127	360	25.7	358	71	12	3602	40	8	9	41	1.68
76586--78123	834	1.8	827	79	7	1774	41	8	9	40	1.68
77617--81414	357	10.7	353	73	10	1322	40	7	9	41	1.67
78444--82127	181	20.6	181	74	8	2469	40	7	9	42	1.67
77645--81016	718	4.7	712	76	8	1871	40	7	9	41	1.67

Tables:   1

The End!