genome.fa.s145.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167970.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_229, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46402

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1086--1137	25	2.0	26	92	3	88	28	17	25	28	1.97
3773--3815	20	2.2	20	100	0	86	23	18	20	37	1.94
6726--8932	883	2.5	881	87	2	3204	26	22	23	27	1.99
11132--11171	18	2.4	17	84	12	55	15	0	32	52	1.43
12541--12581	13	3.1	13	86	6	64	14	0	9	75	1.04
12541--12582	14	3.1	14	89	3	68	14	0	9	76	1.02
12736--13079	87	3.9	88	82	4	406	41	16	20	21	1.90
12736--13076	175	1.9	179	84	4	460	41	17	20	21	1.90
13064--13130	23	3.0	23	82	2	82	29	20	23	25	1.99
13388--13417	13	2.2	14	94	5	53	26	0	10	63	1.26
13875--14217	33	10.5	32	77	11	315	35	16	18	30	1.92
13907--14216	66	4.7	66	83	7	348	35	16	18	29	1.93
13875--14217	98	3.5	97	83	6	410	35	16	18	30	1.92
14216--14246	5	6.2	5	100	0	62	22	0	0	77	0.77
15483--15530	11	4.3	11	84	10	53	2	6	4	87	0.73
21627--21668	23	2.0	21	86	13	59	19	23	33	23	1.97
22482--22523	15	3.1	14	90	10	61	14	0	11	73	1.09
22742--22794	26	2.0	26	88	0	79	30	22	20	26	1.98
22782--28020	873	5.9	871	77	11	4525	26	24	24	25	2.00
25408--25486	26	3.0	26	90	0	122	26	22	26	24	2.00
26330--26408	26	3.0	26	90	0	122	26	22	26	24	2.00
24521--28019	922	3.9	921	89	4	4778	26	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36133--36184	26	2.0	26	92	0	86	28	15	21	34	1.94
37016--37094	26	3.0	26	94	0	140	27	21	24	26	1.99
34400--39218	897	5.4	878	82	8	5030	26	23	23	26	2.00
37921--37973	26	2.0	26	88	0	79	28	20	22	28	1.99
38806--38858	26	2.0	26	88	0	79	30	22	20	26	1.98
39436--39488	26	2.0	26	92	0	88	28	22	22	26	1.99
40258--40309	25	2.0	25	88	3	77	26	21	23	28	1.99
41144--41196	26	2.0	26	96	0	97	26	22	24	26	2.00
39501--42941	874	3.9	870	84	4	4341	25	23	24	26	2.00

Tables:   1

The End!