genome.fa.s16.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167841.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_112, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81219

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
810--846	3	12.3	3	94	0	65	29	0	2	67	1.04
4101--4137	18	2.1	18	89	0	56	37	18	18	24	1.94
5824--5866	18	2.3	19	80	4	52	51	2	2	44	1.27
5814--5849	2	19.5	2	83	16	51	50	0	0	50	1.00
6954--6986	12	2.6	13	90	4	50	48	3	6	42	1.43
7488--7535	20	2.4	22	80	16	59	20	4	6	68	1.28
7607--7657	10	4.5	11	75	24	52	78	0	1	19	0.85
7607--7664	18	3.3	19	80	7	61	79	0	3	17	0.87
7588--7656	34	2.0	36	85	5	97	73	4	1	20	1.07
7904--7954	20	2.5	20	84	9	59	21	3	5	68	1.27
8020--8076	24	2.4	22	80	13	60	77	1	3	17	1.00
8465--8494	10	3.0	10	95	0	51	46	10	0	43	1.37
9163--9261	44	2.4	40	81	6	99	34	16	17	32	1.92
9232--9413	75	2.5	73	79	1	184	37	14	16	31	1.89
9349--9453	39	2.7	39	80	4	104	42	15	15	26	1.86
12718--12806	35	2.4	36	83	11	117	51	8	4	34	1.54
13045--13203	77	2.1	77	84	4	205	55	13	4	26	1.56
13067--13209	77	1.9	75	89	2	223	53	13	5	27	1.61
13106--13274	22	8.8	20	66	28	91	54	11	4	28	1.57
13167--13245	32	2.5	32	95	0	149	55	12	6	25	1.60
13083--13274	77	2.5	78	78	7	178	54	11	5	28	1.58
13229--13300	24	3.0	24	89	0	117	54	9	4	31	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13280--13344	32	2.0	33	81	3	78	46	12	12	29	1.78
14228--14572	42	8.1	41	80	7	352	38	20	12	28	1.89
14228--14572	84	4.1	84	86	2	458	38	20	12	28	1.89
14239--14572	85	3.9	84	87	2	454	38	19	13	29	1.89
14744--14768	13	1.9	13	100	0	50	40	12	24	24	1.88
22035--22079	24	2.0	24	91	8	76	51	8	4	35	1.54
21999--22117	59	2.0	59	96	0	220	53	9	3	33	1.49
22281--22345	19	2.9	22	81	18	73	50	12	4	32	1.60
22281--22338	24	2.4	24	86	11	75	50	12	3	34	1.57
22453--22515	22	3.0	20	77	11	72	57	11	4	26	1.53
22467--22512	23	2.0	23	91	4	76	60	10	4	23	1.47
22450--22599	55	2.7	55	88	0	237	54	12	6	27	1.61
22453--22603	20	8.1	20	68	21	87	53	11	5	28	1.61
22581--22621	18	2.3	18	91	0	64	56	12	2	29	1.49
22576--22687	42	2.7	43	78	12	126	56	10	2	30	1.47
22615--22660	20	2.2	20	84	3	56	58	8	2	30	1.40
22568--22690	21	5.9	21	71	13	94	54	11	3	30	1.52
23333--23367	12	2.8	13	91	4	54	71	8	0	20	1.11
23328--23375	12	3.8	12	81	8	51	72	8	0	18	1.08
23344--23376	13	2.4	14	85	10	50	72	9	0	18	1.10
33512--33567	8	7.1	8	82	17	55	85	1	3	8	0.78
33512--33549	13	2.8	13	92	8	58	84	2	0	13	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33512--33550	14	2.8	14	81	14	53	84	2	0	12	0.72
33518--33567	19	2.7	18	84	6	64	88	0	4	8	0.64
36395--36502	44	2.4	44	81	4	119	29	17	9	43	1.80
39669--39698	15	2.1	14	93	6	51	6	0	10	83	0.81
40563--40588	3	8.7	3	100	0	52	69	0	0	30	0.89
44166--44239	30	2.3	32	81	9	98	29	16	22	31	1.96
44329--44502	97	1.8	93	85	4	240	35	6	17	40	1.77
44318--44636	50	6.6	48	73	12	181	33	9	18	38	1.82
44321--44636	99	3.3	95	76	10	284	33	8	18	39	1.81
44664--44829	86	1.9	88	82	2	210	32	7	15	44	1.75
44660--44910	133	1.9	128	84	5	333	31	6	17	45	1.74
44651--44917	46	6.0	47	73	9	186	31	6	17	44	1.75
44953--45019	17	3.8	17	79	11	62	76	4	2	16	1.08
44970--45009	20	2.0	20	90	4	64	77	2	2	17	0.99
47057--47109	26	2.1	25	89	3	79	24	28	20	26	1.99
47475--47523	20	2.5	20	83	6	64	24	8	34	32	1.85
47615--47651	19	1.9	19	88	0	56	29	5	21	43	1.75
48035--48073	18	2.2	18	85	0	51	15	2	7	74	1.15
59129--59639	118	4.3	118	76	7	439	17	19	17	44	1.87
59129--59682	119	4.7	117	76	6	472	17	20	17	44	1.87
59825--59893	24	2.9	24	91	0	111	20	15	15	47	1.82
59885--59981	26	3.8	26	80	1	79	19	27	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60036--60094	3	19.7	3	89	0	91	30	1	3	64	1.20
60033--60111	12	6.8	11	86	2	50	26	1	2	69	1.09
63835--63873	17	2.4	16	84	12	53	17	5	5	71	1.23
70462--70651	29	6.7	28	70	16	99	32	17	17	32	1.94
70558--70664	29	3.7	29	76	7	92	35	15	16	31	1.91
74084--74187	23	4.5	23	71	13	70	46	24	4	25	1.72
74046--74245	8	25.6	8	68	12	85	47	26	3	23	1.67
74140--74245	23	4.5	23	72	10	72	46	26	2	24	1.66
74108--74270	16	10.4	16	68	12	79	46	26	3	24	1.67
76717--76764	8	6.2	8	79	15	57	77	0	0	22	0.78
76720--76765	15	2.9	16	78	18	60	78	0	0	21	0.76
78847--78951	42	2.4	42	84	12	133	24	20	9	44	1.81
78892--79383	213	2.3	214	82	6	572	36	11	7	44	1.69
78280--79373	467	2.3	453	81	8	1211	35	12	8	43	1.73
79873--79925	27	2.0	26	85	10	72	64	0	1	33	1.05

Tables:   1

The End!