genome.fa.s161.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167986.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_243, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44336

Tables:   1   2   

This is table  1  of  2  ( 194 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119--149	16	1.9	16	93	0	53	48	0	3	48	1.17
1028--1074	17	2.7	18	81	15	55	38	0	0	61	0.96
1030--1093	28	2.2	29	80	2	67	42	1	0	56	1.09
2026--2070	16	3.1	14	82	14	56	55	0	0	44	0.99
2027--2109	14	5.6	15	75	14	66	54	0	0	45	0.99
2264--2320	21	2.6	22	81	13	57	47	3	1	47	1.29
2277--2344	21	3.3	20	78	13	68	44	2	2	50	1.32
2555--2584	12	2.5	12	94	0	51	53	0	0	46	1.00
2570--2636	27	2.4	27	82	9	73	49	1	0	49	1.10
3042--3087	14	3.4	14	77	14	51	54	0	0	45	0.99
3064--3157	31	2.9	32	73	19	88	55	4	0	40	1.19
3034--3222	12	15.2	13	64	25	56	53	2	0	43	1.18
3280--3332	25	2.2	26	86	10	76	52	3	0	43	1.19
3570--3604	18	1.9	18	94	0	61	42	0	0	57	0.99
4436--4485	18	2.8	18	84	6	66	46	4	0	50	1.20
5283--5340	21	2.8	21	76	7	55	48	1	0	50	1.11
5807--5872	11	6.1	11	75	12	57	51	0	0	48	1.00
5799--5872	14	5.4	14	78	14	82	51	0	0	48	1.00
5843--5881	19	2.0	20	90	5	62	53	2	0	43	1.14
5811--5893	19	4.4	19	69	26	52	49	2	0	48	1.14
6321--6446	10	12.6	10	70	24	63	46	1	2	49	1.24
6301--6399	47	2.1	47	81	10	114	48	1	3	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6334--6399	25	2.8	23	74	14	64	46	0	4	48	1.22
6316--6447	60	2.2	61	80	12	141	46	1	2	49	1.23
6532--6578	22	2.2	20	85	7	58	42	4	0	53	1.20
6711--6804	36	2.6	38	80	11	97	45	3	2	48	1.30
7512--7544	14	2.2	16	89	10	52	51	3	0	45	1.16
7744--7791	9	5.6	9	73	26	50	31	6	4	58	1.42
7744--7791	16	2.9	16	82	17	62	31	6	4	58	1.42
9387--9456	18	3.7	18	74	16	54	48	1	0	50	1.09
9271--9466	15	13.1	15	65	20	65	51	1	1	45	1.17
9597--9652	17	3.1	17	85	12	60	44	1	5	48	1.36
10168--10213	21	2.1	22	84	4	58	36	2	2	58	1.22
10217--10262	23	2.0	23	82	0	56	52	4	0	43	1.21
10236--10293	21	2.8	20	75	15	55	53	3	0	43	1.17
10514--10556	22	2.0	22	86	9	61	51	2	2	44	1.27
10536--10615	33	2.4	34	79	8	94	51	0	3	45	1.19
11055--11096	22	1.9	22	85	9	59	42	0	0	57	0.99
11065--11112	25	1.9	25	84	16	64	43	0	2	54	1.12
11101--11165	22	3.1	22	70	19	66	50	1	3	44	1.26
11899--11953	18	3.0	17	80	19	58	43	0	3	52	1.18
12231--12293	20	3.2	20	73	13	76	52	6	0	41	1.27
12241--12299	14	4.4	14	72	12	52	52	5	0	42	1.23
12230--12313	39	2.2	39	97	0	159	51	4	1	42	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12312--12379	23	3.1	24	76	20	76	58	1	4	35	1.27
12336--12380	19	2.4	19	76	23	51	57	0	4	37	1.19
12315--12387	23	3.3	23	72	16	73	53	1	4	41	1.28
12452--12499	20	2.4	19	82	6	51	43	0	2	54	1.12
12916--12955	21	1.9	21	85	10	55	42	5	2	50	1.37
13036--13093	16	3.6	17	77	15	61	51	1	1	44	1.21
13034--13103	32	2.2	32	85	10	90	50	1	1	47	1.19
13116--13203	22	3.9	22	69	25	67	52	2	1	44	1.21
13140--13203	15	4.2	15	71	16	60	53	3	1	42	1.26
13253--13315	30	2.1	30	85	5	83	41	3	7	47	1.48
13572--13634	27	2.3	26	83	5	72	49	3	3	44	1.34
13609--13643	16	2.3	15	90	5	52	54	2	5	37	1.39
13668--13723	23	2.3	26	79	14	66	41	3	3	51	1.36
13734--13791	29	2.0	28	83	9	73	51	1	0	46	1.11
13999--14055	24	2.4	23	77	8	60	50	0	0	49	1.00
14105--14133	14	2.0	15	93	6	51	48	0	0	51	1.00
14102--14146	18	2.7	17	80	13	58	46	0	0	53	1.00
14386--14416	16	1.9	16	93	0	53	48	0	3	48	1.17
15297--15343	17	2.7	18	81	15	55	38	0	0	61	0.96
15299--15362	28	2.2	29	80	2	67	42	1	0	56	1.09
15932--15999	27	2.4	28	78	11	77	60	4	1	33	1.26
15934--16000	26	2.6	27	77	13	77	59	4	1	34	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15990--16039	23	2.1	25	85	7	68	52	0	2	46	1.12
16559--16597	19	2.0	21	90	10	64	48	0	2	48	1.15
16704--16788	21	4.0	21	75	8	77	49	5	1	43	1.34
16840--16869	12	2.5	12	94	0	51	53	0	0	46	1.00
16704--16890	80	2.3	81	78	12	190	48	4	0	46	1.27
16850--16903	27	2.0	27	85	7	74	46	1	0	51	1.11
17319--17365	14	3.4	14	78	18	53	55	0	0	44	0.99
17310--17365	29	2.0	28	86	10	78	55	0	0	44	0.99
17341--17435	32	3.1	30	71	20	81	56	4	0	38	1.19
17443--17491	18	2.9	17	80	17	57	51	2	2	44	1.24
17517--17557	16	2.5	17	88	4	57	56	2	0	41	1.13
17517--17565	16	3.0	16	81	3	53	55	2	0	42	1.11
17601--17655	10	5.7	10	80	18	55	40	0	1	58	1.09
17601--17645	18	2.3	20	82	17	60	42	0	0	57	0.98
17811--17859	22	2.2	21	82	10	62	44	0	0	55	0.99
17806--17869	26	2.6	24	79	13	76	43	0	0	56	0.99
17828--17869	18	2.4	17	84	4	57	42	0	0	57	0.99
17976--18005	11	2.7	11	94	0	51	43	6	3	46	1.46
18319--18362	13	3.4	13	83	0	52	43	0	2	54	1.12
18330--18377	23	2.1	24	81	14	57	52	0	2	45	1.12
18353--18398	18	2.8	17	81	18	53	63	2	0	34	1.07
18691--18741	18	2.8	18	87	3	75	45	3	0	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19335--19386	23	2.2	24	86	6	72	46	3	3	46	1.39
19666--19725	28	2.0	31	84	9	81	51	0	1	46	1.10
19677--19731	28	1.9	29	81	3	67	54	0	1	43	1.10
20007--20084	41	1.9	39	82	10	95	44	3	2	48	1.34
20061--20139	33	2.5	34	75	22	82	53	0	0	46	1.00
20071--20118	12	4.1	12	83	2	62	50	0	0	50	1.00
20071--20137	14	4.9	14	78	9	75	52	0	0	47	1.00
20071--20146	19	4.0	20	72	16	63	52	1	0	46	1.08
20086--20158	19	4.1	19	69	25	52	50	2	0	46	1.15
20191--20275	28	3.1	29	71	17	74	47	1	1	50	1.16
20584--20708	10	12.5	10	70	24	61	46	1	2	49	1.24
20596--20661	25	2.8	23	74	14	64	46	0	4	48	1.22
20578--20709	60	2.2	61	80	12	141	46	2	2	49	1.27
20793--20839	22	2.2	20	85	7	58	42	4	0	53	1.20
20971--21064	36	2.6	38	80	11	97	45	3	2	48	1.30
21554--21588	18	1.9	18	88	0	52	40	0	2	57	1.14
21771--21803	14	2.2	16	89	10	52	51	3	0	45	1.16
21822--21876	25	2.2	24	84	12	67	47	3	1	47	1.30
22002--22050	16	2.9	16	80	20	55	30	8	4	57	1.47
22527--22581	22	2.4	23	72	6	58	43	1	0	54	1.10
23524--23561	20	1.9	20	89	10	60	52	0	0	47	1.00
23651--23720	18	3.7	18	74	16	54	48	1	0	50	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23861--23916	17	3.1	17	85	12	60	44	1	5	48	1.36
24423--24468	21	2.1	22	84	4	58	36	2	2	58	1.22
24472--24517	23	2.0	23	82	0	56	52	4	0	43	1.21
24491--24548	21	2.8	20	75	15	55	53	3	0	43	1.17
24769--24811	22	2.0	22	86	9	61	51	2	2	44	1.27
24791--24870	33	2.4	34	79	8	94	51	0	3	45	1.19
25306--25361	21	2.5	22	83	16	64	42	0	1	55	1.10
25317--25376	12	4.8	13	78	13	63	43	0	1	55	1.10
25306--25381	22	3.2	21	77	22	64	43	0	1	55	1.08
25336--25392	14	4.2	14	76	13	57	45	0	1	52	1.11

Tables:   1   2