genome.fa.s169.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167994.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_250, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42929

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131--715	181	3.2	181	81	2	683	38	8	10	41	1.71
565--971	166	2.5	163	80	6	457	39	8	9	42	1.68
985--1427	180	2.4	181	77	5	428	40	9	9	40	1.70
1112--1466	182	2.0	180	81	5	421	38	8	10	43	1.68
1669--4548	181	16.1	178	74	10	1526	40	8	9	41	1.67
1603--4548	180	16.5	179	74	9	1718	40	7	9	42	1.67
1782--3000	361	3.4	358	79	8	1003	41	8	8	41	1.65
2792--2825	17	1.9	18	88	5	52	47	5	14	32	1.69
3339--3795	178	2.5	178	78	10	437	39	6	10	43	1.66
3725--4030	166	1.8	167	86	4	440	40	6	10	43	1.63
3361--4318	528	1.8	526	80	7	1147	39	6	10	43	1.65
4553--6314	181	9.9	180	75	8	1253	41	7	8	42	1.64
4600--6252	361	4.6	359	76	8	1242	41	7	8	42	1.63
6432--6648	120	1.8	120	85	2	310	32	12	8	46	1.72
6531--10326	180	21.2	181	77	6	3161	41	9	8	40	1.68
6552--42929	361	101.1	359	68	13	9420	41	10	8	40	1.69
10334--11718	181	7.7	181	74	10	827	42	9	8	39	1.68
11535--11571	18	2.0	19	89	5	58	56	0	8	35	1.29
11541--11578	20	1.9	20	88	0	58	60	0	7	31	1.25
12266--13077	181	4.5	178	78	6	593	40	9	8	41	1.68
13150--13493	174	2.0	174	82	6	430	41	9	7	41	1.65
13534--14040	182	2.8	181	79	7	457	43	8	7	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13894--14200	160	1.9	160	83	2	393	42	8	7	41	1.64
14036--17039	181	16.8	181	74	8	1873	41	9	8	39	1.69
15140--15505	176	2.1	176	79	5	400	42	11	8	37	1.71
16922--17172	133	1.9	133	87	1	369	43	9	7	40	1.64
17046--17984	179	5.3	177	76	6	488	40	9	8	41	1.68
16382--17630	671	1.9	671	83	5	1623	41	9	7	41	1.66
17046--17984	356	2.6	354	76	6	824	40	9	8	41	1.68
18069--18525	180	2.5	179	77	6	440	45	8	7	38	1.63
18413--18653	127	1.9	126	80	8	276	43	9	7	39	1.65
18090--19004	487	1.9	481	80	5	1063	43	9	8	39	1.66
19028--19119	16	5.4	16	82	12	112	38	16	3	42	1.64
19028--19127	35	2.9	35	79	5	125	37	15	4	44	1.65
19083--25483	181	35.8	181	77	6	4920	41	10	7	40	1.68
21532--21570	18	2.2	18	86	9	53	56	2	7	33	1.41
24283--24562	154	1.8	154	81	5	352	38	11	7	41	1.71
25344--25621	152	1.8	153	84	3	382	41	8	7	41	1.66
25857--25881	11	2.3	11	100	0	50	64	0	0	36	0.94
25496--28500	180	16.9	181	73	11	1155	42	9	8	39	1.67
26307--26353	17	2.9	16	78	12	51	57	6	0	36	1.24
26524--26862	165	2.0	166	81	6	393	42	7	8	40	1.65
26757--27083	176	1.8	180	82	7	425	42	8	8	40	1.65
26691--30156	180	19.5	181	73	11	1797	41	9	8	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32425--32480	16	3.4	16	69	26	53	35	12	3	48	1.58
32410--32485	34	2.2	35	95	2	136	39	13	3	43	1.62
32458--42929	181	58.1	180	73	9	5867	41	9	8	39	1.69
32458--42922	540	19.4	536	74	10	5668	41	9	8	39	1.69
35271--42922	538	14.2	539	74	10	4313	41	9	8	39	1.69
36851--36894	19	2.4	19	82	14	56	20	4	13	61	1.50
36851--36894	20	2.4	19	85	11	56	20	4	13	61	1.50
37169--37201	17	2.0	17	88	5	50	39	9	0	51	1.34
35272--42929	357	21.3	354	72	10	3831	41	9	8	39	1.69
41572--41610	18	2.3	16	86	8	51	61	2	0	35	1.10
41616--42883	177	7.1	175	75	7	785	41	10	7	39	1.69
41465--42873	535	2.6	523	82	5	1583	41	10	7	39	1.69
32536--42929	358	28.9	349	71	12	3753	41	9	8	39	1.69

Tables:   1

The End!